Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03343 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTAACCTTCTCCAAGCGCAGAAACGGTTTGCTCAAGAAAGCCTTCGAGTTATCTGTGCTGTGCGATGCTGAAATCGCTCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTAGCACTGACATTAACAGAATCATTGAAAAGTATCGTCAATGCTGCTTCGACATGTCTCAGATCGGCGACGAAGCTGAACTTCAATCGCAGCAGGAGCTTTTGGTATTAAGAGTCAAGCATGAATCGCTCCAACGAACTCAAAGGAATCTTATGGGAGAAGAACTTGAGCCACTTAACATGAAAGAATTGCATAGCTTGGAGAAACAACTGGATAAAACGCTTGCACAAGCTCGGAAGCACCTATCACAGAAGCTGGTGTCAAAAATTGACGAACTACACGGAAAGGTGCGCAACCTGGAGCAGATTAACAGACATTTGGAGTCAAAGGACATAGCTAAATGCACTCAGATTTGTGAAGATTCTACTAATCAGTTTGAAAGTGGAACAGCAAGTTCGTTGCCGCTTCAGCAGGAGCAAATTACTTCAAAGGGAAAAGAAGTAGAAACGAGGTGCCTTAACGAGAATAACGAATTGCAGCTTTGA 657 0.4368 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIEKYRQCCFDMSQIGDEAELQSQQELLVLRVKHESLQRTQRNLMGEELEPLNMKELHSLEKQLDKTLAQARKHLSQKLVSKIDELHGKVRNLEQINRHLESKDIAKCTQICEDSTNQFESGTASSLPLQQEQITSKGKEVETRCLNENNELQL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03343 218 Coils Coil 121 141 - -
Viun7g03343 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun7g03343 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun7g03343 218 ProSiteProfiles K-box domain profile. 84 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun7g03343 218 FunFam MADS-box transcription factor 1 13 84 - -
Viun7g03343 218 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Viun7g03343 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun7g03343 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun7g03343 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun7g03343 218 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Viun7g03343 218 Coils Coil 147 167 - -
Viun7g03343 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun7g03343 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun7g03343 218 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Viun7g03343 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Viun7g03343 218 Pfam K-box region 83 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03343 Viun-Chr7 35326466 35333827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03343 1 164 MADS-box Gene Family AT1G24260 52.632 5.04e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun7g03343 K-box 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03343 K09264 - gmx:100802197 337.421