Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03333 ATGGTGAGGGGAAAGGTTCAAATGAAGAAAATAGAGGATGCAACAAGCCGTCAAGTGACCTTTTCAAAGCGTCGAAATGGTCTTCTAAAGAAAGCTTATGAGCTATCTGTTCTTTGTGATGCACAAGTAGCTGTCATAGTCTTCTCCCAGAATGGAAGGCTCTATGAGTTCTCAAGTTCCGACATGTCAAAGATTTTGGAACGATACCGTGAATATACCAAGGATGTTCCTGCCAATAAGTTTGGAGATGATTATATCCAGCAACTGAAGTTAGAATCCGCAAACATGGCAGAGAAGATTCGGCTTCTTGAAATATCTAAAAGGCTCAACTATACATGGAACAGATCGATCAACTACGATCCCAGGAGACTAACTTGCTCCAAGAGAATGCCAAATTAA 399 0.4085 MVRGKVQMKKIEDATSRQVTFSKRRNGLLKKAYELSVLCDAQVAVIVFSQNGRLYEFSSSDMSKILERYREYTKDVPANKFGDDYIQQLKLESANMAEKIRLLEISKRLNYTWNRSINYDPRRLTCSKRMPN 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03333 132 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Viun7g03333 132 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Viun7g03333 132 Coils Coil 86 106 - -
Viun7g03333 132 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Viun7g03333 132 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun7g03333 132 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 106 - -
Viun7g03333 132 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun7g03333 132 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun7g03333 132 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Viun7g03333 132 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun7g03333 132 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun7g03333 132 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun7g03333 132 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03333 Viun-Chr7 35272398 35282277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03333 1 108 MADS-box Gene Family AT5G62165 70.642 6.39e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun7g03333 SRF-TF 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03333 - - vun:114190787 263.077