Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03322 ATGTTTTCCACCGACTCACAAGCGACCTCGCCGGTGTCGGGAGGTTCTCGTCCGGCGCTGTCGGACGAGGAAGTTTTTCTGGCGGCGAGCCACCCCAAGAAACGCGCCGGGAGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTTCCGCGGCGTCAGGCGGAGGGACTCCGGCAAGTGGGTGTGCGAGGTGCGCGAGCCCAATAAGAAGACTAGGATTTGGTTGGGGACCTTTCCCACGGCGGAGATGGCAGCGCGTGCGCACGACGTGGCTGCGCTGGCGCTTAGGGGAAGGTCGGCCTGTCTCAATTTCGCCGACTCCACGAATCGGTTACCGGTGCCGGCGACGGCGGATCCCCGGGACATTCAGAAGGCGGCGGCAGAGGCTGCAGAGGCGTTTCGGCCCGGTAATGAATCGGGAAAGGATGATGATGCGGTGGTGGAGACGGTGGCGACAGCGACGGAAAATGATGAAGAAAAAGAGATGGAGGATCTGAAGAACATGGTGCTGATGTCGCCAACCCGTTGCTTCGAGAGTGATGAATATGGAAGTACGGAAATGGAATTTGAAGACATTGAAGTTTCGTTGTGGAGTTATTCACTCTAA 606 0.5891 MFSTDSQATSPVSGGSRPALSDEEVFLAASHPKKRAGRKKFRETRHPVFRGVRRRDSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAALALRGRSACLNFADSTNRLPVPATADPRDIQKAAAEAAEAFRPGNESGKDDDAVVETVATATENDEEKEMEDLKNMVLMSPTRCFESDEYGSTEMEFEDIEVSLWSYSL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03322 201 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Viun7g03322 201 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Viun7g03322 201 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Viun7g03322 201 MobiDBLite consensus disorder prediction 1 43 - -
Viun7g03322 201 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Viun7g03322 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 199 IPR045277 GO:0003700
Viun7g03322 201 MobiDBLite consensus disorder prediction 1 16 - -
Viun7g03322 201 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Viun7g03322 201 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Viun7g03322 201 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Viun7g03322 201 SUPERFAMILY DNA-binding domain 48 107 IPR016177 GO:0003677
Viun7g03322 201 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03322 Viun-Chr7 35204159 35205652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03322 20 199 AP2-EREBP Transcription Factor Family AT1G63030 53.723 2.65e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g03322 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03322 - - gmx:100101894 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02296 4 38534014 38535016 Viun7g03322 7 35204159 35205652 ECH
Viun7g03322 7 35204159 35205652 Viun7g03322 7 35204159 35205652 ECH
Viun4g02296 4 38534014 38535016 Viun7g03322 7 35204159 35205652 PCT