Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03319 ATGGAAGATGAAAGAGATGCTGAGGCTGCTATTCGTGCTCTTGATAGAGTGGAATTTGGTCGGAAGGGACGAAGACTCCGTGTGGAATGGACAAAGCATGAACGTGGTGTTAGAAGGCCATCTAGTTCAAGAAGACCCTCAGCTAATGGGAGGCCATCAAAGACCTTGTTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCATATGGTAAGATAGTCAGTGTTAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCGGAAGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGTAAGTTACTGGATCGAGTTATTTCTGTTGAATTTGCTGTAAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGACGTGATCGTCAACGTGATAGAAGCCGTGATGGAAGACGATCCCCTAGTCCTTATAGGAGAGAAAGAGGTAGTCCTGATTACGGTCGTGGGCCCAGTCCATATCAGAGAGAGAGGGGCAGCCCTGACTATGGCCGTGACCGAAGCCGTAGCAGAAGCCCCCCTAGGAGGGAGCGAGCTAGCCCTGCATATGGGCGCAGAAGCCCCAGTCCATATAGAAGAGAAAGGGAGGATTCTGATCCTGTTCGGGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGCCATTTCTCCTTCTCATAGTCCTGAAGAAAGAGGGAGGACAAGTCCTCAAAATGGTCGTGGTTCTAGCCGTAGTCCTCGTGATACTGGGAAGACTAGCCCTGAAAATGGACATGGCTCTGGAAGTCCCAATGAAAAAGGGAATGCCAGCCCTTACAATGGTTATGGAAGGAGCCCAAATGCTGTGCCTGATGCTAGGGACAGTCCTAACTATGGTGGTCCTGAAAGTCCCATGCATGAAAGATATCGCAGCCAATCTCCCCCTGCGGACGAATGA 987 0.4823 MEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPSSSRRPSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRRERASPAYGRRSPSPYRREREDSDPVRDSSRSPYHKERGRTDHAISPSHSPEERGRTSPQNGRGSSRSPRDTGKTSPENGHGSGSPNEKGNASPYNGYGRSPNAVPDARDSPNYGGPESPMHERYRSQSPPADE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03319 328 SUPERFAMILY RNA-binding domain, RBD 1 51 IPR035979 GO:0003676
Viun7g03319 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 125 IPR000504 GO:0003723
Viun7g03319 328 MobiDBLite consensus disorder prediction 178 244 - -
Viun7g03319 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 118 IPR000504 GO:0003723
Viun7g03319 328 MobiDBLite consensus disorder prediction 127 165 - -
Viun7g03319 328 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 311 - -
Viun7g03319 328 Gene3D - 41 136 IPR012677 -
Viun7g03319 328 MobiDBLite consensus disorder prediction 33 53 - -
Viun7g03319 328 FunFam Serine/arginine-rich splicing factor RS31 46 136 - -
Viun7g03319 328 MobiDBLite consensus disorder prediction 245 292 - -
Viun7g03319 328 SMART rrm1_1 55 121 IPR000504 GO:0003723
Viun7g03319 328 MobiDBLite consensus disorder prediction 127 328 - -
Viun7g03319 328 SUPERFAMILY RNA-binding domain, RBD 39 131 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03319 Viun-Chr7 35154946 35158852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03319 22 127 Eukaryotic Initiation Factors Gene Family AT3G16380 30.973 1.57e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03319 K12893 - gmx:100796509 521.931