Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03318 ATGAAGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGTTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGACAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGATGAAAGAGATGCTGAGGCTGCTATTCGTGCTCTTGATAGAGTGGAATTTGGTCGGAAGGGACGAAGACTCCGTGTGGAATGGACAAAGCATGAACGTGGTGTTAGAAGGCCATCTAGTTCAAGAAGACCCTCAGCTAATGGGAGGCCATCAAAGACCTTGTTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCATATGGTAAGATAGTCAGTGTTAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCGGAAGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGTAAGTTACTGGATCGAGTTATTTCTGTTGAATTTGCTGTAAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGACGTGATCGTCAACGTGATAGAAGCCGTGATGGAAGACGATCCCCTAGTCCTTATAGGAGAGAAAGAGGTAGTCCTGATTACGGTCGTGGGCCCAGTCCATATCAGAGAGAGAGGGGCAGCCCTGACTATGGCCGTGACCGAAGCCGTAGCAGAAGCCCCCCTAGGAGGGAGCGAGCTAGCCCTGCATATGGGCGCAGAAGCCCCAGTCCATATAGAAGAGAAAGGGAGGATTCTGATCCTGTTCGGGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGCCATTTCTCCTTCTCATAGTCCTGAAGAAAGAGGGAGGACAAGTCCTCAAAATGGTCGTGGTTCTAGCCGTAGTCCTCGTGATACTGGGAAGACTAGCCCTGAAAATGGACATGGCTCTGGAAGTCCCAATGAAAAAGGGAATGCCAGCCCTTACAATGGTTATGGAAGGAGCCCAAATGCTGTGCCTGATGCTAGGGACAGTCCTAACTATGGTGGTCCTGAAAGTCCCATGCATGAAAGATATCGCAGCCAATCTCCCCCTGCGGACGAATGA 1110 0.4748 MKPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPSSSRRPSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRRERASPAYGRRSPSPYRREREDSDPVRDSSRSPYHKERGRTDHAISPSHSPEERGRTSPQNGRGSSRSPRDTGKTSPENGHGSGSPNEKGNASPYNGYGRSPNAVPDARDSPNYGGPESPMHERYRSQSPPADE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03318 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Viun7g03318 369 MobiDBLite consensus disorder prediction 219 285 - -
Viun7g03318 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Viun7g03318 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Viun7g03318 369 SMART rrm1_1 96 162 IPR000504 GO:0003723
Viun7g03318 369 SMART rrm1_1 3 70 IPR000504 GO:0003723
Viun7g03318 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Viun7g03318 369 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 299 - -
Viun7g03318 369 MobiDBLite consensus disorder prediction 168 206 - -
Viun7g03318 369 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Viun7g03318 369 SUPERFAMILY RNA-binding domain, RBD 4 90 IPR035979 GO:0003676
Viun7g03318 369 MobiDBLite consensus disorder prediction 168 369 - -
Viun7g03318 369 CDD RRM1_AtRSp31_like 2 73 - -
Viun7g03318 369 MobiDBLite consensus disorder prediction 286 333 - -
Viun7g03318 369 Gene3D - 88 177 IPR012677 -
Viun7g03318 369 Gene3D - 1 87 IPR012677 -
Viun7g03318 369 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Viun7g03318 369 SUPERFAMILY RNA-binding domain, RBD 79 172 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03318 Viun-Chr7 35154946 35158852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03318 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 23.699 1.09e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03318 K12893 - gmx:100796509 605.134