Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03300 ATGCTTCATATTCCTCTAAACAAACCAAACCCTTCTCTCATTCTTCCCTCTGCCACTCTCTTCATGGCTCTTCCCTTCAACCTCGTACACTCCTACCTCGTCCTGCTCTTCTTGCTGTGTTTTTTGCATGTCACCGCAGACCAAAACAACGACAAGCTTTACCTCCTTTCCTTCAAAGAGGGTCTCCAAAACCCTCACGTTCTCCCCTCATGGAACCCCGCCACCCCGCACTGCGACTGGGTCGGCGTCAAGTGCCAACTTGGTCGAGTCACCTCGCTCTCTCTTCCCAACCGCAACCTCAGAGGAAAACTCTCTTCGTCGCTCTTTTCTCTCTCTTCACTCTCTCTCCTCAACCTACGTGACAACCAGCTCACCGGGGAGATCCCCAGCGAGCTCGGCGGGTTGCTTCAGCTGGAAACTCTCCGACTCGGCTCCAACTCGCTCGCCGGGAATATCCCGCCGGAGGTGGGGCTCTTGACCAAGCTATGCACTCTCGACCTCTCCGGGAACTCGCTCGTTGGAGAAGTGCCGGAGAGCGTCGGGAATTTGACCCGGCTTGAGTTTCTCGACCTCAGCAACAACTTTTTATCGGGTTCTCTTCCGGTGAGTCTCTTTACCGGAGCGAGGTCTTTGATTTCCGTTGATATCTCGAACAACTCGTTTTCCGGCGTAATCCCGCCGGAAATCGGGAACTGGCGGAACATCAGTGCTCTTTACGTGGGGATTAACAAGTTGTCTGGGACTTTGCCGAGGGAGATTGGGTTGCTTTCAAAACTTGAAATTTTCTACTCTCCTTCCTGTTCCATCGAAGGTCCTTTGCCTGAGGAAATGGCGAAGCTGAAAGCGTTGACCAAGCTTGACCTTTCTTACAACCCCTTGAGGTGTTCGATTCCCCGGTTCATTGGGGAGCTGGAGAGCTTGAAAATTTTGGACCTTGTGTTCGCCCAGCTTAATGGGTCGGTGCCAGCCGAGCTTGGGAAGTGTAAGAATTTGAGGTCCGTGATGCTTTCTTTCAATTCACTCTCTGGGTCTCTGCCTGAGGAGCTTTCTGAGCTTCCCATGTTAACCTTTTCTGCTGAGAAAAATCAGCTTCATGGGCCTCTGCCTTCTTGGCTGGGGAAGTGGAGCAATATCGATTCTCTTTTGCTCTCTGCTAACCGTTTTTCTGGGGTTATTCCTCCTGAACTTGGGAATTGTTCTGTGATGGAGCACCTCAGTTTAAGCAGCAATTTGTTGACAGGTCCTATTCCAGAGGAGCTTTGTAATGCTGCCTCACTTTTGGAAGTTGATCTTGATGACAATTTTCTCTCTGGTACACTGGAGAAAGTTTTCGTCAAGTGTAAGAACCTTACGCAGTTGGTTTTGATGAATAATAGGATTGTTGGTTCTATACCCGAGTATCTTTCTGAGTTACCCTTGATGGTGCTGGACCTTGATTCCAACAATTTTAGTGGGAAAATACCTTCTGGGCTGTGGAACTCATTGGCTCTGATGGAGTTCTCCGCTGCTAATAACCATTTGGAGGGTTCTCTTCCTGTGGAGATTGGGAATGCAGTTATGCTGGAGAGGCTTGTTCTTAGCAATAATCGTCTGACAGGTACTATTCCTAAGGAAATTGGGAGACTCTCAACTCTTTCAGTTCTTAACTTGAACGGGAATATGCTTGGAGGGAGTATCCCAACTGAGCTTGGTGGTTGCACTTCCCTCACTACACTGGACCTTGGAAATAATCAGCTGAACGGATCTATTCCTGAGAAACTGGTTGAACTGAGCCAATTGCAGTGTCTGGTTCTTTCTCACAATAATCTATCTGGATCCATTCCTGCCAAAAAATCTTCATATTTTAGACAGCGCAGCATCCCTGATCTGAGCTTTGTTCAGCACCTTGGCGTGTTTGATCTCTCTCACAATAGATTGTCTGGCCCCATACCCGATGAAATTGGGAGTTGCGCAGTGGTTGTGAATCTCCTAGTTAGCAACAACATGCTCTCTGGTAGCATTCCTAAATCACTCTCACTCTTGACGAATCTTACAACTTTGGATCTGTCTGACAACTTATTGTCGGGTTCCATTCCACTGGAGCTAGGAGGTGTGCTCAAGCTCCAGGGTTTGTATTTGGGACATAATCAGCTGTCAGGTACCATCCCTCAAAGCTTTGGAAAGTTGACTAATTTGGTGAAGCTGAACTTGACAGGAAATAAGTTGTCTGGTCCAATTCCGGTGAGTTTTGAGAACATGAAAGGGTTGACTCACTTGGACTTGAGCTATAATGAGCTTAGCGGCGAGTTTCCTTCTTCTCTTTCAGGAGTGCAGAGCCTTGTTGGGATTTACGTGCAAAATAACAGGCTTTCAGGCCAACTAGGGGAACTCTTCTCAAACTCCATGACATGGAGGATTGAGACAGTGAATTTAAGTGACAATTGCTTCAATGGGAACTTTCCGCGGTCTTTGGGAAATCTTTCTTACCTGACAAATTTGGATCTTCATGGAAACATGTTGACTGGAGACATTCCTTTAGACCTTGGGGATCTTATGCAACTGGAATATTTTGATGTTTCAGGTAATAAACTATCTGGAAGGATTCCAGACAAGTTATGCGGCCTAGATAATCTGGTTTACCTAGATGTGTCACGAAACAGGTTGGAAGGTCCAATACCAAGTAATGGTATTTGCCAGAACCTACCCAGAGTTAGACTTGCAGGGAACAGAAACCTTTGTGGCCAGATGTTGGGTATAAATTGTCAGGATAAAACCATTGGAAGATCAGTATTGTATAATGCATGGCGGCTTGCTGCAATTGCGGTTACAATTTTACTGCTAACTCTCACAATTGCTTTTGTTCTGCATAAATGGATTACCAGGAGGCAAACTAATCCTGAGGAGCTTCAGGAGCGCAAACTAAACAGTTATGTTGATCACAATCTTTATTTCTTGAGCAGTAGCAGATCAAAGGAGCCATTGAGTATCAATGTTGCAATGTTTGAGCAGCCTCTTCTGAAGTTAACTTTGGTGGACATCCTTGAAGCAACTGACAACTTCAGCAAGGCAAATATAATCGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTTTACCTAATGGAAAAACAGTTGCTGTGAAGAAGCTTAGTGAGGCTAAAACGCAAGGTCATCGAGAGTTCATGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAATCTCGTTGAATTGCTTGGATATTGTTCAATCGGCGAGGAGAAACTGCTTGTTTATGAATATATGGTAAATGGGAGCTTAGATCTTTGGTTGAGAAATAAGACCGGGGCGCTTGAAATCCTGGACTGGAACAAACGTTACAAAATTGCAACTGATGCAGCTCGAGGATTGGCTTTCCTTCATCATGGTTTTATACCTCACATCATTCACAGGGATGTTAAGGCTAGCAACATCTTGCTGAATGAAGATTTTGAGCCAAAGGTTGCAGACTTTGGACTGGCAAGACTGATCAGTGCTTGTGAGACTCATATCACCACGGATATTGCTGGAACATTTGGTTACATTCCACCAGAGTATGGACAGAGTGGGAGATCCACAACAAGAGGAGATGTTTACAGTTTTGGGGTGATTTTGCTTGAACTTGTGACTGGTAAAGAGCCAACGGGACCAGATTTTAAAGAGATTGAAGGTGGTAACTTGGTTGGATGGGTTAGTCAGAAGATCAAGAAGGGACATGCTGCTGATGTTCTTGATCCATCAGTTCTTGATGCTGACTCAAAGCAGATGATGCTTCAAATGCTGCAAATCGCTTGTGTTTGCATATCTGACAATCCTGCAAACAGGCCTACCATGCTTCAGGTGCACAAATTCTTGAAGGGGATGAAGGGAGAGTAG 3876 0.4579 MLHIPLNKPNPSLILPSATLFMALPFNLVHSYLVLLFLLCFLHVTADQNNDKLYLLSFKEGLQNPHVLPSWNPATPHCDWVGVKCQLGRVTSLSLPNRNLRGKLSSSLFSLSSLSLLNLRDNQLTGEIPSELGGLLQLETLRLGSNSLAGNIPPEVGLLTKLCTLDLSGNSLVGEVPESVGNLTRLEFLDLSNNFLSGSLPVSLFTGARSLISVDISNNSFSGVIPPEIGNWRNISALYVGINKLSGTLPREIGLLSKLEIFYSPSCSIEGPLPEEMAKLKALTKLDLSYNPLRCSIPRFIGELESLKILDLVFAQLNGSVPAELGKCKNLRSVMLSFNSLSGSLPEELSELPMLTFSAEKNQLHGPLPSWLGKWSNIDSLLLSANRFSGVIPPELGNCSVMEHLSLSSNLLTGPIPEELCNAASLLEVDLDDNFLSGTLEKVFVKCKNLTQLVLMNNRIVGSIPEYLSELPLMVLDLDSNNFSGKIPSGLWNSLALMEFSAANNHLEGSLPVEIGNAVMLERLVLSNNRLTGTIPKEIGRLSTLSVLNLNGNMLGGSIPTELGGCTSLTTLDLGNNQLNGSIPEKLVELSQLQCLVLSHNNLSGSIPAKKSSYFRQRSIPDLSFVQHLGVFDLSHNRLSGPIPDEIGSCAVVVNLLVSNNMLSGSIPKSLSLLTNLTTLDLSDNLLSGSIPLELGGVLKLQGLYLGHNQLSGTIPQSFGKLTNLVKLNLTGNKLSGPIPVSFENMKGLTHLDLSYNELSGEFPSSLSGVQSLVGIYVQNNRLSGQLGELFSNSMTWRIETVNLSDNCFNGNFPRSLGNLSYLTNLDLHGNMLTGDIPLDLGDLMQLEYFDVSGNKLSGRIPDKLCGLDNLVYLDVSRNRLEGPIPSNGICQNLPRVRLAGNRNLCGQMLGINCQDKTIGRSVLYNAWRLAAIAVTILLLTLTIAFVLHKWITRRQTNPEELQERKLNSYVDHNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKANIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVELLGYCSIGEEKLLVYEYMVNGSLDLWLRNKTGALEILDWNKRYKIATDAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVSQKIKKGHAADVLDPSVLDADSKQMMLQMLQIACVCISDNPANRPTMLQVHKFLKGMKGE 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03300 1291 SUPERFAMILY RNI-like 92 413 - -
Viun7g03300 1291 SUPERFAMILY RNI-like 361 605 - -
Viun7g03300 1291 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1135 1147 IPR008271 GO:0004672|GO:0006468
Viun7g03300 1291 SUPERFAMILY L domain-like 622 907 - -
Viun7g03300 1291 Pfam Leucine rich repeat N-terminal domain 49 85 IPR013210 -
Viun7g03300 1291 SMART serkin_6 1013 1285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03300 1291 ProSitePatterns Protein kinases ATP-binding region signature. 1019 1042 IPR017441 GO:0005524
Viun7g03300 1291 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 700 1286 - -
Viun7g03300 1291 SUPERFAMILY Protein kinase-like (PK-like) 994 1285 IPR011009 -
Viun7g03300 1291 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 48 201 - -
Viun7g03300 1291 PRINTS Leucine-rich repeat signature 186 199 - -
Viun7g03300 1291 PRINTS Leucine-rich repeat signature 674 687 - -
Viun7g03300 1291 Pfam Protein tyrosine and serine/threonine kinase 1016 1285 IPR001245 GO:0004672|GO:0006468
Viun7g03300 1291 Gene3D Phosphorylase Kinase; domain 1 976 1088 - -
Viun7g03300 1291 ProSiteProfiles Protein kinase domain profile. 1013 1285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g03300 1291 FunFam serine/threonine-protein kinase BRI1-like 2 1089 1291 - -
Viun7g03300 1291 FunFam Leucine-rich repeat receptor protein kinase EMS1 356 615 - -
Viun7g03300 1291 Pfam Leucine rich repeat 675 735 IPR001611 GO:0005515
Viun7g03300 1291 Pfam Leucine rich repeat 137 194 IPR001611 GO:0005515
Viun7g03300 1291 Pfam Leucine rich repeat 521 579 IPR001611 GO:0005515
Viun7g03300 1291 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 622 918 - -
Viun7g03300 1291 Gene3D Transferase(Phosphotransferase) domain 1 1089 1291 - -
Viun7g03300 1291 Gene3D Ribonuclease Inhibitor 205 356 IPR032675 -
Viun7g03300 1291 Gene3D Ribonuclease Inhibitor 357 615 IPR032675 -
Viun7g03300 1291 Gene3D Ribonuclease Inhibitor 616 917 IPR032675 -
Viun7g03300 1291 SMART LRR_typ_2 722 745 IPR003591 -
Viun7g03300 1291 SMART LRR_typ_2 626 650 IPR003591 -
Viun7g03300 1291 SMART LRR_typ_2 542 566 IPR003591 -
Viun7g03300 1291 SMART LRR_typ_2 111 135 IPR003591 -
Viun7g03300 1291 SMART LRR_typ_2 820 844 IPR003591 -
Viun7g03300 1291 SMART LRR_typ_2 183 207 IPR003591 -
Viun7g03300 1291 SMART LRR_typ_2 674 698 IPR003591 -
Viun7g03300 1291 SMART LRR_typ_2 868 893 IPR003591 -
Viun7g03300 1291 SMART LRR_typ_2 159 182 IPR003591 -
Viun7g03300 1291 SMART LRR_typ_2 567 590 IPR003591 -
Viun7g03300 1291 SMART LRR_typ_2 280 304 IPR003591 -
Viun7g03300 1291 SMART LRR_typ_2 746 770 IPR003591 -
Viun7g03300 1291 Gene3D Ribonuclease Inhibitor 48 204 IPR032675 -
Viun7g03300 1291 Pfam Leucine Rich Repeat 749 769 IPR001611 GO:0005515
Viun7g03300 1291 SMART LRR_sd22_2 844 870 - -
Viun7g03300 1291 SMART LRR_sd22_2 746 772 - -
Viun7g03300 1291 SMART LRR_sd22_2 566 592 - -
Viun7g03300 1291 SMART LRR_sd22_2 820 841 - -
Viun7g03300 1291 SMART LRR_sd22_2 183 204 - -
Viun7g03300 1291 SMART LRR_sd22_2 674 695 - -
Viun7g03300 1291 SMART LRR_sd22_2 447 470 - -
Viun7g03300 1291 SMART LRR_sd22_2 722 743 - -
Viun7g03300 1291 SMART LRR_sd22_2 159 178 - -
Viun7g03300 1291 SMART LRR_sd22_2 280 306 - -
Viun7g03300 1291 FunFam serine/threonine-protein kinase BRI1-like 2 974 1088 - -
Viun7g03300 1291 FunFam leucine-rich repeat receptor protein kinase EMS1 206 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03300 Viun-Chr7 35023740 35027953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03300 46 1286 Receptor kinase-like Gene Family AT5G07280 59.182 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Viun7g03300 PK_Tyr_Ser-Thr 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03300 - - vum:124838832 2401.32