Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03299 ATGGCTCCGCCGCTGGAACACAACAGCGACTCCACCAGCGCCGAGTCTCAGAGATCCATTCCCACGCCGTTTCTCACCAAAACCTACCAGCTCGTCGACGATCACACCATCGATGATGTCATTTCCTGGAACGATTCTGGATCATCCTTCATCGTTTGGAACACCACCGTTTTTGCCAGGGATTTGCTTCCTAAATATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGATTCAGAAAAGTTGTACCTGATCGGTGGGAATTCTCCAACGAGTGTTTCCGAAGAGGCCAGAAGCAACTTCTCTGCGAAATTCAGCGGCGGAAGATCCTCTCCTCGTCGCCGCCAGCTGGAGCAACTGCTAGCGTGGCGTTTCCGTCGCCACTGCCGCTTTCCGCAATTCCGATATCGAAGCCGATCGTGTCGCCGTCAAACTCAACGGAGGAGCAGGTGATCTCGTCGAACTCTTCGCCGTCGAGAGTTCCGGCAGAGCTGTTGGACGAGAACGAGCGGCTGAGAAAGGAGAACATTCTTTTGATGAAGGAATTGGAAGAGATGAGATCGCTCTGCAACAACATACTCAATCTCATGTCGAATTACGCAACCTCTAGAGCGGACGGTGGTGCCGAGGCGGTAAAGACGCTTGGTTTGATGCCGTTGAAGCGGTGCTCTGCTGAGGACGCGGCGGAGGAGATGAATCCGAAGCTGTTTGGGGTGGCGATTGGTACGAAGCGAGCAAGAGAGGAAGGACGTGGAGCGGAGTATGATACGGTTTTGAGTCTTCATCCGTTCCACGCTGACGTGAAATCTGAACCGTTAGATTTCGAAAGACATAGAGAAAACAGAAGTACTTCGTGGCTAAATCACTGTCGTACAGCAAACGAGAGAATGTGTAATTGA 915 0.518 MAPPLEHNSDSTSAESQRSIPTPFLTKTYQLVDDHTIDDVISWNDSGSSFIVWNTTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGQKQLLCEIQRRKILSSSPPAGATASVAFPSPLPLSAIPISKPIVSPSNSTEEQVISSNSSPSRVPAELLDENERLRKENILLMKELEEMRSLCNNILNLMSNYATSRADGGAEAVKTLGLMPLKRCSAEDAAEEMNPKLFGVAIGTKRAREEGRGAEYDTVLSLHPFHADVKSEPLDFERHRENRSTSWLNHCRTANERMCN 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03299 304 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g03299 304 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g03299 304 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g03299 304 Coils Coil 174 194 - -
Viun7g03299 304 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g03299 304 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g03299 304 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Viun7g03299 304 Gene3D - 16 114 IPR036388 -
Viun7g03299 304 FunFam Heat stress transcription factor B-4 16 114 - -
Viun7g03299 304 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 205 IPR027725 -
Viun7g03299 304 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03299 Viun-Chr7 35015627 35017156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03299 2 304 HSF AT5G62020 47.692 1.46e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun7g03299 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03299 K09419 - gmx:100780987 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03299 7 35015627 35017156 Viun7g03299 7 35015627 35017156 ECH
Viun4g02248 4 38160328 38161964 Viun7g03299 7 35015627 35017156 PCT