Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03281 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGAGTCAAAAGGGGAGCTTGGACTCCTGAAGAAGACCAAACCTTGGTTGACTACATCAAGGAGCATGGTCATGGAAGTTGGCGTACACTTCCCAAACATGCAGGTCTCTTACGATGTGGAAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCTGGTATCAAACGTGGCCCATTTACCAGTGAAGAAGAAAGCACAATTGTTCAACTCCATGGAATGCTTGGCAATAGGTGGGCTGCTATAGCATCCCAATTACCTGGAAGAACAGACAACGAGATTAAGAACTATTGGAACACCCATCTAAAGAAGCGTCTCCTTCGATCATGTCATTCCCTAAGAGAAAAACATTCATGTCTGGTTCTGGATCAAACTGTTGTCAAGTCAGAATCTCCTTCTACGCGTCACATGGTACAATGGGAAAGTGTAAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCTCATTGCTCAATTCGTGGCCAAAGAGTTCGACATGCCCTGATCACTTTCTTCATCTTTGGCATTCTGAGGTTGGAAATTCATTTCGCATGGTCAAGGGAAAGGAAGGAGTTGTTGTGAGTCAAAGTCCTGTATCACATCCTTCATCTTCATCTAAATTGGAGTCTTGTTCAGATGTGTCATTGCAGGTGAAAAACAATGGAACTAGTAGCCTAAATCCATGCATTGAGGATGTGAACATGGTTCATGAACAGATAAGTAGCTACAAACCAAAGCTTGATGACACAGCTGGGTCTGACTCAGGCAATTATGAATTTCTTGATACTTCAGATTCTGCATTAAAGCACCTACTACACATGTCTGATGGTGATGTTGGATTCTTGGGACAGAATGATAATTTCTTGAATCTCCTTGATGCTACATGTGACCAAGATAGTTTCTTTCATATCTCTGCAGAGAAAGGCAATCTTTGA 966 0.4265 MGKAPCCEKHGVKRGAWTPEEDQTLVDYIKEHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEESTIVQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRLLRSCHSLREKHSCLVLDQTVVKSESPSTRHMVQWESVRVEAEARLSMESSLLNSWPKSSTCPDHFLHLWHSEVGNSFRMVKGKEGVVVSQSPVSHPSSSSKLESCSDVSLQVKNNGTSSLNPCIEDVNMVHEQISSYKPKLDDTAGSDSGNYEFLDTSDSALKHLLHMSDGDVGFLGQNDNFLNLLDATCDQDSFFHISAEKGNL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03281 321 FunFam Myb transcription factor 11 67 - -
Viun7g03281 321 CDD SANT 69 112 IPR001005 -
Viun7g03281 321 FunFam MYB transcription factor 69 116 - -
Viun7g03281 321 CDD SANT 16 61 IPR001005 -
Viun7g03281 321 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun7g03281 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun7g03281 321 Gene3D - 14 66 - -
Viun7g03281 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun7g03281 321 Gene3D - 69 116 - -
Viun7g03281 321 SMART sant 13 63 IPR001005 -
Viun7g03281 321 SMART sant 66 114 IPR001005 -
Viun7g03281 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Viun7g03281 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun7g03281 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun7g03281 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun7g03281 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03281 Viun-Chr7 34939381 34942355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03281 1 295 MYB Transcription Factor Family AT3G61250 50.831 1.22e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun7g03281 Myb_DNA-binding 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03281 K09422 - gmx:100782075 530.02