Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03254 ATGCAGGCTCCAACAACACTCACCGGATCGCTCCACCGCGTAGCCGGAATATTCCCTTCCCACCGTGCCGTCTCTGTCTCAGGAAAATTCCAACTCACGCACTCCCGCCTCCACCACCTTGTCGAACGCGCTGCCGTACGCCTCCTCTCCACCGGCATCAAACCCGGCGATGTCGTTGCACTCACCTTCCCCAACACCGTTGAGTTTATAATAACGTTTCTGGCCGTCATTCGAGCGCGAGCCACGGCGGCGCCGTTGAACGCGGCTTACACTGCGGAAGAGTTCGAATTTTATTTATCCGACTCAGAGTCAAAGCTTTTGATAACATCAAAAGAAGGGAACGAGCCGGCTCAAGCCGCGGCTTCCAAGCTTAGCATTCCGGTATCAACAGCTTCGCTCGACGAAGCAGAAGCCGAAGAACTCAATCTCTCTCTGAGTTACACCGAGTCACCGACCGACTCGATTTCCGAACTCGTTAACGACGAGTCCGACGTGGCATTGTTCCTCCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGTTGACGCAGCACAACTTGGCCTCATCGGTGGAGAACATCAAGTCCGTGTACAAACTCACTGAGTCTGACTCGACCGTCATCGTTCTCCCATTGTTCCACGTCCACGGGTTAATCGCCGCGTTGCTGGGTTCACTAGCCGCCGGAGCCTCCGTGGCGCTCCCGGCGGCAGGGAGGTTCTCCGCCTCCTCGTTTTGGAGCGACATGTCAACGTACAACGCCACGTGGTACACCGCTGTTCCTACGGTGCACCAAATCCTGTTGGAGCGTCATTTGAAAACCCCGGAACCGGTTTACCCGAAGCTCCGGTTTATTCGGAGCTGCAGTGCCTCTCTTGCACCGGTTATATTGGAGAGGTTGGAGGAGGCGTTTGGGGCACCGGTTTTGGAGGCTTATGCAATGACGGAAGCGTCGCATTTAATGTCGACGAATCCATTACCTGAAGATGGGCCTCATCGGGCCGGGTCCGTCGGGAAGCCCGTGGGCCAGGAAATGGCAATATTAGACGAGAAGGGTGAGATTCTAAAGAATGATGAGAAAGGTGAGGTTTGTATTAGGGGACCCAATGTTACCAAAGGTTATAAAAATAACCCTGATGCGAATATTTCTGCCTTTCAATACGGGTGGTTCCACACCGGTGATATCGGGTTTTTTGATTCGGATGGGTATTTGCATCTCGTGGGTCGGATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCAATAGAGGTTGATGCTGTGCTTCTATCTCATCCAGACATCGCCCAAGCAGTTGCATTCGGAGTTCCAGATGATAAATATGGCGAAGAGATAAACTGTGCGATCATCCCAAAAGAAGGATCAAAGATTGATGAAGCAGAGGTGCATAGATTTAGCAAGAAGAACCTTGCAACCTTCAAAGTCCCTAAAAAGGTGTTCATCACTGATTCTTTGCCCAAGACCGCCACTGGCAAGATTCTGAGGCGTCTTGTTGCACAACACTTCATTTCTCAAACTTGA 1548 0.5239 MQAPTTLTGSLHRVAGIFPSHRAVSVSGKFQLTHSRLHHLVERAAVRLLSTGIKPGDVVALTFPNTVEFIITFLAVIRARATAAPLNAAYTAEEFEFYLSDSESKLLITSKEGNEPAQAAASKLSIPVSTASLDEAEAEELNLSLSYTESPTDSISELVNDESDVALFLHTSGTTSRPKGVPLTQHNLASSVENIKSVYKLTESDSTVIVLPLFHVHGLIAALLGSLAAGASVALPAAGRFSASSFWSDMSTYNATWYTAVPTVHQILLERHLKTPEPVYPKLRFIRSCSASLAPVILERLEEAFGAPVLEAYAMTEASHLMSTNPLPEDGPHRAGSVGKPVGQEMAILDEKGEILKNDEKGEVCIRGPNVTKGYKNNPDANISAFQYGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPKEGSKIDEAEVHRFSKKNLATFKVPKKVFITDSLPKTATGKILRRLVAQHFISQT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03254 515 SUPERFAMILY Acetyl-CoA synthetase-like 5 513 - -
Viun7g03254 515 Gene3D - 6 410 IPR042099 -
Viun7g03254 515 FunFam Peroxisomal-coenzyme A synthetase 6 410 - -
Viun7g03254 515 Gene3D - 411 512 IPR045851 -
Viun7g03254 515 Pfam AMP-binding enzyme 15 417 IPR000873 -
Viun7g03254 515 CDD FACL_fum10p_like 19 509 IPR045310 GO:0016874
Viun7g03254 515 PANTHER ACYL-COA SYNTHETASE 18 512 - -
Viun7g03254 515 FunFam 4-coumarate--CoA ligase 2 413 514 - -
Viun7g03254 515 ProSitePatterns Putative AMP-binding domain signature. 168 179 IPR020845 -
Viun7g03254 515 Pfam AMP-binding enzyme C-terminal domain 426 501 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03254 Viun-Chr7 34790975 34794375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03254 5 514 Monolignol Biosynthesis Gene Families AT4G05160 31.559 4.11e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03254 K22133 - gmx:100783685 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03254 7 34790975 34794375 Viun7g03254 7 34790975 34794375 ECH