Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03245 ATGCCACTACCGGAAAATGTGGGCGGGTACTGTGTAATTAAGGAAAGGATGACACAAGCGCTTCGATACTTCAAAGAGTTGACTGAATTGAATGTTCTGGCTCAAGTTTGGGCACCTGTGCGGAATGGTAATAGGTATGTGCTTACAACTTCAGGACAACCATTTGTTCTTGATCCACACAGTAATGGTCTCCATCAGTATAGAACGGTCTCTCTGATGTACGTGTTCGCTGTGGATGGTGAGGATGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCAGAATGGACTCCCAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCTACATTACAATGTTCGTGGATCTTTGGCTTTGCCCGTGTTTGAGCCGGCATTGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACCTCACAGAAGATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATATGTAATGAAGGCCGTCAGAATGCTTTATCAGAGATCTTGGAGATACTGACAGTGGTTTGTGAAAATCATAATTTACCTCTGGCGCAAACATGGATTCCCTGTAAGCATCGGAGTGTGTTGGCCCAAGGTGGTGGTGTGAAGAAAATTTGTTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACGTAGCATTCTATATTATAGATGCTCATTTATGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTACAACAAAGTCAAGGGGTTGCTGGGAGGGCCTTTCTGTCCCACAGCATGTGCTTCTGTTCAAACATTACCCAGTTCTGCAAAACTGATTATCCCTTAGTTCATTATGCTCTCATGTTTGGATTAACAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAACTGATGATTATGTATTGGAGTTTTTTCTGCCTCCTAGGGTCACAGACTTTCACGAACAAAAGACTTTGTTGGCGTCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGATGGTTCAATTGAAATTATTGAAGCAACAATTGAAAGAATTCACACGAGGCTTGAATCCATTCCAATTGCCCCATCTATTAGATCACCACATAGACCTGGTACTTCACCAAATATGGAGGAGGAAGTTCCACGTGATCCATCAGAGAAACACATATTGAAGTACTGCAATGGTATCAATCATGAAGCGAATCTCAGTGATAAAGCAGGTGGAAAAATTGATCATATGACTACTTTAGAGACTAAAACCTCAAAGAAACCCTTAGAGAGGAAGCGTGGCAAAACTGAGAAATCAATCAGTCTTGAAGTCTTGCAACGATATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCAACCACAATGAAGCGCATATGTAGGCAGCATGGGATATCACGTTGGCCATCTCGAAAGATCAACAAGGTTAATCGTTCCCTGTCCAAGCTGAAGCGTGTTATTGAATCTGTGCAGGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCACAAGTCCACTTCCCATTGCTGTTGGTTCCCTTCCTGAACCATCTACTCCAAACAAGTTCACTCAGCCAGTCTCAATGAGCATTAGACCATCAGAGCCTCAGATGAAAGTGAATGAATCCAAAGAATTAGAAACAAACAGAGAAGCAGGAATGGAAGATCAATTGGTAGGAAGAATACATAATCTTGAGAGAGTTACAAATGATAAAGGAGGTTCTGAGGTTGGGAAAGAACCAAAAAGGACTAGAACTGGAAGTGGCTCAAGTGAGGATAGCACAAACCCTACTTCTCACGGTTCATGGCATGACAGTCCCCCAAATGAAAGTTCACCTGTAAAAGATATATTCATTACTTCCAACCATGACCAATGTGCTGTGCTAAGGAGATCACCAGAATCAACACCGAACAAGCCCACTCCTTTCCCCGTGCCTGAATTTATGGCTGCAGAACTTCAAGAGCCATTTGGGGGGATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGGCAATTTTGGAGGACCTTGTTCCTGAAGCTTGTGGGACTAATCCTCCAGCCCTAGATTTATCTCCCAAGCAAAGCATGGGTACTCCTAATAAAGCAGTGACACCTTTTGCAGCTACAAAAGAAATGAAGACTGTGACAATCAAGGCAACATACAGAGAAGATATCATAAGATTCCGGGTCTCATTAACATGTGGCATTGTGGAACTGAAAGAAGAAGTTGCTAAAAGATTGAAACTTGAGGTGGGTACATTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTATCAAGATCATCAGGTAGCAACATAATTAGGGTTTTGGTGCATGATATAACGTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGGGAGTGA 2592 0.4271 MPLPENVGGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYVFAVDGEDDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHALHYNVRGSLALPVFEPALQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCENHNLPLAQTWIPCKHRSVLAQGGGVKKICSSFDGSCMGKVCMSTTDVAFYIIDAHLWGFREACVEHHLQQSQGVAGRAFLSHSMCFCSNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGTDDYVLEFFLPPRVTDFHEQKTLLASILATMKQHFQSLKIASGVELEDGSIEIIEATIERIHTRLESIPIAPSIRSPHRPGTSPNMEEEVPRDPSEKHILKYCNGINHEANLSDKAGGKIDHMTTLETKTSKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPIAVGSLPEPSTPNKFTQPVSMSIRPSEPQMKVNESKELETNREAGMEDQLVGRIHNLERVTNDKGGSEVGKEPKRTRTGSGSSEDSTNPTSHGSWHDSPPNESSPVKDIFITSNHDQCAVLRRSPESTPNKPTPFPVPEFMAAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPPALDLSPKQSMGTPNKAVTPFAATKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03245 863 MobiDBLite consensus disorder prediction 399 420 - -
Viun7g03245 863 Pfam RWP-RK domain 472 520 IPR003035 -
Viun7g03245 863 Pfam PB1 domain 768 849 IPR000270 GO:0005515
Viun7g03245 863 ProSiteProfiles PB1 domain profile. 768 850 IPR000270 GO:0005515
Viun7g03245 863 FunFam RWP-RK domain-containing protein 765 849 - -
Viun7g03245 863 PANTHER PROTEIN NLP8 13 862 IPR045012 GO:0003700
Viun7g03245 863 MobiDBLite consensus disorder prediction 561 581 - -
Viun7g03245 863 MobiDBLite consensus disorder prediction 558 660 - -
Viun7g03245 863 Gene3D - 765 849 - -
Viun7g03245 863 CDD PB1_NLP 769 849 IPR034891 -
Viun7g03245 863 SMART PB1_new 768 850 IPR000270 GO:0005515
Viun7g03245 863 SUPERFAMILY CAD & PB1 domains 764 853 - -
Viun7g03245 863 ProSiteProfiles RWP-RK domain profile. 459 540 IPR003035 -
Viun7g03245 863 MobiDBLite consensus disorder prediction 632 660 - -
Viun7g03245 863 MobiDBLite consensus disorder prediction 582 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03245 Viun-Chr7 34653824 34657962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03245 147 863 NLP Transcription Factor Family AT4G24020 52.782 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Viun7g03245 PB1 2.4e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03245 - - gmx:100786118 1536.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02161 4 37076447 37081640 Viun7g03245 7 34653824 34657962 PCT