Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03244 ATGTCAGAATCTGAGGAAGAAAATACAGACTGTGTTCCAAGGTCAAAGCCAGCAGAGGAAGGTGGCTGCACCATGGACTTCGATCTGGACTTGGAAACTTCATGGCCTTTGGATCACATGGCCTTTGTCTCCAATCCCATGTCACCTTTTCTGTTCTCCTCCAACTCTGACCAGCCTTACTCTCCTCTGTGGGCTTTCTCTGATGGAGAAGACCCCAAGTTTCCAGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCCCTTGTGATTCAAATTCAATAGCTGAAAAGCCAGAGGAGAATGATGAGAGCAAGAAGCTTTTGCCACCACTTGCGCCTATGCCACTACCGGAAAATGTGGGCGGGTACTGTGTAATTAAGGAAAGGATGACACAAGCGCTTCGATACTTCAAAGAGTTGACTGAATTGAATGTTCTGGCTCAAGTTTGGGCACCTGTGCGGAATGGTAATAGGTATGTGCTTACAACTTCAGGACAACCATTTGTTCTTGATCCACACAGTAATGGTCTCCATCAGTATAGAACGGTCTCTCTGATGTACGTGTTCGCTGTGGATGGTGAGGATGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCAGAATGGACTCCCAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCTACATTACAATGTTCGTGGATCTTTGGCTTTGCCCGTGTTTGAGCCGGCATTGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACCTCACAGAAGATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATATGTAATGAAGGCCGTCAGAATGCTTTATCAGAGATCTTGGAGATACTGACAGTGGTTTGTGAAAATCATAATTTACCTCTGGCGCAAACATGGATTCCCTGTAAGCATCGGAGTGTGTTGGCCCAAGGTGGTGGTGTGAAGAAAATTTGTTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACGTAGCATTCTATATTATAGATGCTCATTTATGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTACAACAAAGTCAAGGGGTTGCTGGGAGGGCCTTTCTGTCCCACAGCATGTGCTTCTGTTCAAACATTACCCAGTTCTGCAAAACTGATTATCCCTTAGTTCATTATGCTCTCATGTTTGGATTAACAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAACTGATGATTATGTATTGGAGTTTTTTCTGCCTCCTAGGGTCACAGACTTTCACGAACAAAAGACTTTGTTGGCGTCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGATGGTTCAATTGAAATTATTGAAGCAACAATTGAAAGAATTCACACGAGGCTTGAATCCATTCCAATTGCCCCATCTATTAGATCACCACATAGACCTGGTACTTCACCAAATATGGAGGAGGAAGTTCCACGTGATCCATCAGAGAAACACATATTGAAGTACTGCAATGGTATCAATCATGAAGCGAATCTCAGTGATAAAGCAGGTGGAAAAATTGATCATATGACTACTTTAGAGACTAAAACCTCAAAGAAACCCTTAGAGAGGAAGCGTGGCAAAACTGAGAAATCAATCAGTCTTGAAGTCTTGCAACGATATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCAACCACAATGAAGCGCATATGTAGGCAGCATGGGATATCACGTTGGCCATCTCGAAAGATCAACAAGGTTAATCGTTCCCTGTCCAAGCTGAAGCGTGTTATTGAATCTGTGCAGGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCACAAGTCCACTTCCCATTGCTGTTGGTTCCCTTCCTGAACCATCTACTCCAAACAAGTTCACTCAGCCAGTCTCAATGAGCATTAGACCATCAGAGCCTCAGATGAAAGTGAATGAATCCAAAGAATTAGAAACAAACAGAGAAGCAGGAATGGAAGATCAATTGGTAGGAAGAATACATAATCTTGAGAGAGTTACAAATGATAAAGGAGGTTCTGAGGTTGGGAAAGAACCAAAAAGGACTAGAACTGGAAGTGGCTCAAGTGAGGATAGCACAAACCCTACTTCTCACGGTTCATGGCATGACAGTCCCCCAAATGAAAGTTCACCTGTAAAAGATATATTCATTACTTCCAACCATGACCAATGTGCTGTGCTAAGGAGATCACCAGAATCAACACCGAACAAGCCCACTCCTTTCCCCGTGCCTGAATTTATGGCTGCAGAACTTCAAGAGCCATTTGGGGGGATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGGCAATTTTGGAGGACCTTGTTCCTGAAGCTTGTGGGACTAATCCTCCAGCCCTAGATTTATCTCCCAAGCAAAGCATGGGTACTCCTAATAAAGCAGTGACACCTTTTGCAGCTACAAAAGAAATGAAGACTGTGACAATCAAGGCAACATACAGAGAAGATATCATAAGATTCCGGGTCTCATTAACATGTGGCATTGTGGAACTGAAAGAAGAAGTTGCTAAAAGATTGAAACTTGAGGTGGGTACATTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTATCAAGATCATCAGGTAGCAACATAATTAGGGTTTTGGTGCATGATATAACGTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGGGAGTGA 2928 0.4331 MSESEEENTDCVPRSKPAEEGGCTMDFDLDLETSWPLDHMAFVSNPMSPFLFSSNSDQPYSPLWAFSDGEDPKFPASAFSDCHKIFPCDSNSIAEKPEENDESKKLLPPLAPMPLPENVGGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYVFAVDGEDDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHALHYNVRGSLALPVFEPALQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCENHNLPLAQTWIPCKHRSVLAQGGGVKKICSSFDGSCMGKVCMSTTDVAFYIIDAHLWGFREACVEHHLQQSQGVAGRAFLSHSMCFCSNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGTDDYVLEFFLPPRVTDFHEQKTLLASILATMKQHFQSLKIASGVELEDGSIEIIEATIERIHTRLESIPIAPSIRSPHRPGTSPNMEEEVPRDPSEKHILKYCNGINHEANLSDKAGGKIDHMTTLETKTSKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPIAVGSLPEPSTPNKFTQPVSMSIRPSEPQMKVNESKELETNREAGMEDQLVGRIHNLERVTNDKGGSEVGKEPKRTRTGSGSSEDSTNPTSHGSWHDSPPNESSPVKDIFITSNHDQCAVLRRSPESTPNKPTPFPVPEFMAAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPPALDLSPKQSMGTPNKAVTPFAATKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03244 975 MobiDBLite consensus disorder prediction 744 772 - -
Viun7g03244 975 ProSiteProfiles RWP-RK domain profile. 571 652 IPR003035 -
Viun7g03244 975 SMART PB1_new 880 962 IPR000270 GO:0005515
Viun7g03244 975 MobiDBLite consensus disorder prediction 694 743 - -
Viun7g03244 975 Pfam PB1 domain 880 961 IPR000270 GO:0005515
Viun7g03244 975 FunFam RWP-RK domain-containing protein 877 961 - -
Viun7g03244 975 Pfam RWP-RK domain 584 632 IPR003035 -
Viun7g03244 975 MobiDBLite consensus disorder prediction 511 532 - -
Viun7g03244 975 CDD PB1_NLP 881 961 IPR034891 -
Viun7g03244 975 PANTHER PROTEIN NLP8 56 974 IPR045012 GO:0003700
Viun7g03244 975 MobiDBLite consensus disorder prediction 670 772 - -
Viun7g03244 975 SUPERFAMILY CAD & PB1 domains 876 965 - -
Viun7g03244 975 MobiDBLite consensus disorder prediction 673 693 - -
Viun7g03244 975 ProSiteProfiles PB1 domain profile. 880 962 IPR000270 GO:0005515
Viun7g03244 975 Gene3D - 877 961 - -
Viun7g03244 975 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03244 Viun-Chr7 34653824 34658282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03244 259 975 NLP Transcription Factor Family AT4G24020 52.782 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Viun7g03244 PB1 2.8e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03244 - - gmx:100786118 1725.68