LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g03244	ATGTCAGAATCTGAGGAAGAAAATACAGACTGTGTTCCAAGGTCAAAGCCAGCAGAGGAAGGTGGCTGCACCATGGACTTCGATCTGGACTTGGAAACTTCATGGCCTTTGGATCACATGGCCTTTGTCTCCAATCCCATGTCACCTTTTCTGTTCTCCTCCAACTCTGACCAGCCTTACTCTCCTCTGTGGGCTTTCTCTGATGGAGAAGACCCCAAGTTTCCAGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCCCTTGTGATTCAAATTCAATAGCTGAAAAGCCAGAGGAGAATGATGAGAGCAAGAAGCTTTTGCCACCACTTGCGCCTATGCCACTACCGGAAAATGTGGGCGGGTACTGTGTAATTAAGGAAAGGATGACACAAGCGCTTCGATACTTCAAAGAGTTGACTGAATTGAATGTTCTGGCTCAAGTTTGGGCACCTGTGCGGAATGGTAATAGGTATGTGCTTACAACTTCAGGACAACCATTTGTTCTTGATCCACACAGTAATGGTCTCCATCAGTATAGAACGGTCTCTCTGATGTACGTGTTCGCTGTGGATGGTGAGGATGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCAGAATGGACTCCCAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCTACATTACAATGTTCGTGGATCTTTGGCTTTGCCCGTGTTTGAGCCGGCATTGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACCTCACAGAAGATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATATGTAATGAAGGCCGTCAGAATGCTTTATCAGAGATCTTGGAGATACTGACAGTGGTTTGTGAAAATCATAATTTACCTCTGGCGCAAACATGGATTCCCTGTAAGCATCGGAGTGTGTTGGCCCAAGGTGGTGGTGTGAAGAAAATTTGTTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACGTAGCATTCTATATTATAGATGCTCATTTATGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTACAACAAAGTCAAGGGGTTGCTGGGAGGGCCTTTCTGTCCCACAGCATGTGCTTCTGTTCAAACATTACCCAGTTCTGCAAAACTGATTATCCCTTAGTTCATTATGCTCTCATGTTTGGATTAACAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAACTGATGATTATGTATTGGAGTTTTTTCTGCCTCCTAGGGTCACAGACTTTCACGAACAAAAGACTTTGTTGGCGTCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGATGGTTCAATTGAAATTATTGAAGCAACAATTGAAAGAATTCACACGAGGCTTGAATCCATTCCAATTGCCCCATCTATTAGATCACCACATAGACCTGGTACTTCACCAAATATGGAGGAGGAAGTTCCACGTGATCCATCAGAGAAACACATATTGAAGTACTGCAATGGTATCAATCATGAAGCGAATCTCAGTGATAAAGCAGGTGGAAAAATTGATCATATGACTACTTTAGAGACTAAAACCTCAAAGAAACCCTTAGAGAGGAAGCGTGGCAAAACTGAGAAATCAATCAGTCTTGAAGTCTTGCAACGATATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCAACCACAATGAAGCGCATATGTAGGCAGCATGGGATATCACGTTGGCCATCTCGAAAGATCAACAAGGTTAATCGTTCCCTGTCCAAGCTGAAGCGTGTTATTGAATCTGTGCAGGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCACAAGTCCACTTCCCATTGCTGTTGGTTCCCTTCCTGAACCATCTACTCCAAACAAGTTCACTCAGCCAGTCTCAATGAGCATTAGACCATCAGAGCCTCAGATGAAAGTGAATGAATCCAAAGAATTAGAAACAAACAGAGAAGCAGGAATGGAAGATCAATTGGTAGGAAGAATACATAATCTTGAGAGAGTTACAAATGATAAAGGAGGTTCTGAGGTTGGGAAAGAACCAAAAAGGACTAGAACTGGAAGTGGCTCAAGTGAGGATAGCACAAACCCTACTTCTCACGGTTCATGGCATGACAGTCCCCCAAATGAAAGTTCACCTGTAAAAGATATATTCATTACTTCCAACCATGACCAATGTGCTGTGCTAAGGAGATCACCAGAATCAACACCGAACAAGCCCACTCCTTTCCCCGTGCCTGAATTTATGGCTGCAGAACTTCAAGAGCCATTTGGGGGGATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGGCAATTTTGGAGGACCTTGTTCCTGAAGCTTGTGGGACTAATCCTCCAGCCCTAGATTTATCTCCCAAGCAAAGCATGGGTACTCCTAATAAAGCAGTGACACCTTTTGCAGCTACAAAAGAAATGAAGACTGTGACAATCAAGGCAACATACAGAGAAGATATCATAAGATTCCGGGTCTCATTAACATGTGGCATTGTGGAACTGAAAGAAGAAGTTGCTAAAAGATTGAAACTTGAGGTGGGTACATTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTATCAAGATCATCAGGTAGCAACATAATTAGGGTTTTGGTGCATGATATAACGTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGGGAGTGA	2928	0.4331	MSESEEENTDCVPRSKPAEEGGCTMDFDLDLETSWPLDHMAFVSNPMSPFLFSSNSDQPYSPLWAFSDGEDPKFPASAFSDCHKIFPCDSNSIAEKPEENDESKKLLPPLAPMPLPENVGGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYVFAVDGEDDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHALHYNVRGSLALPVFEPALQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCENHNLPLAQTWIPCKHRSVLAQGGGVKKICSSFDGSCMGKVCMSTTDVAFYIIDAHLWGFREACVEHHLQQSQGVAGRAFLSHSMCFCSNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGTDDYVLEFFLPPRVTDFHEQKTLLASILATMKQHFQSLKIASGVELEDGSIEIIEATIERIHTRLESIPIAPSIRSPHRPGTSPNMEEEVPRDPSEKHILKYCNGINHEANLSDKAGGKIDHMTTLETKTSKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPIAVGSLPEPSTPNKFTQPVSMSIRPSEPQMKVNESKELETNREAGMEDQLVGRIHNLERVTNDKGGSEVGKEPKRTRTGSGSSEDSTNPTSHGSWHDSPPNESSPVKDIFITSNHDQCAVLRRSPESTPNKPTPFPVPEFMAAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPPALDLSPKQSMGTPNKAVTPFAATKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE	975

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g03244	975	MobiDBLite	consensus disorder prediction	744	772	-	-
	Viun7g03244	975	ProSiteProfiles	RWP-RK domain profile.	571	652	IPR003035	-
	Viun7g03244	975	SMART	PB1_new	880	962	IPR000270	GO:0005515
	Viun7g03244	975	MobiDBLite	consensus disorder prediction	694	743	-	-
	Viun7g03244	975	Pfam	PB1 domain	880	961	IPR000270	GO:0005515
	Viun7g03244	975	FunFam	RWP-RK domain-containing protein	877	961	-	-
	Viun7g03244	975	Pfam	RWP-RK domain	584	632	IPR003035	-
	Viun7g03244	975	MobiDBLite	consensus disorder prediction	511	532	-	-
	Viun7g03244	975	CDD	PB1_NLP	881	961	IPR034891	-
	Viun7g03244	975	PANTHER	PROTEIN NLP8	56	974	IPR045012	GO:0003700

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g03244	Viun-Chr7	34653824	34658282	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g03244	259	975	NLP Transcription Factor Family	AT4G24020	52.782	0.0	685

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Viun7g03244		PB1	2.8e-19	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g03244	-		-	gmx:100786118	1725.68

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