Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03238 ATGGGTAGCATCGTGGTGGAGGACGCCGACACTGACACAGTGTATGTGGCGGTGGGAAAGAACGCGGAGAAGACGCAGCAACTGTTGCATTGGACGGTTAAGAATTTCTCGGGCAAGAATGTTTGTCTTCTTCATATTCACCGACCTTACTCCCTCGATTCATTCTACAGGAATCTCTCTGGGTATGAACCAAAAGACCTTCCAATCCAGGCATTCCAGGATCAGGGAAATCAATCAGTGCACGAACTCCTAGACCAATACATTCTTGATCTGGTTCCTGCAGGGGTACGGGCCTGTAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCACAGAAGCTATTGCTCAACACAGTATTAGATGGCTTGTAGTGGGAGCAGCAGCAGATGGATATAACATGGGCAAACTGGCAAAGCAAGATTCGGAGAAGGCTATTTTTATACGCGAACAAGCATTGCTATCATGTAATATTTGGTTCATTTGCAAGGGCAACCTCATATGTACTAGGGTATATAGTAAGCATACTTCTGACATAGAAGGTGGGCCTGCATTGTTGGTGCTCAATTCAAACACAGAAAGATCTACATCAAAATCGACTCCTGATGCATTGAAATATTTAGATTCTGGTGATATGAAAGAAATCCAAAGTATCAGTTTCAACCGTTCCTTAAATACAAAACGGTCCTTTAATAAGGTCGCGGACAGGTCAAAGTTGGCAGATTTGATGTTTCATGAGGATGAGGCATTTGAAAGCCGCTGTGCTCAGGAAATAAGAAGAAGAAAAGAAGTTGAAGAACAATTGGCGAGGTCAAAGCAAGAAGTACAGAAAATGAAGAATCAGCAGGATGAAATACTTGAAGAATTGCAAATGGTCAAAGACCAAAATTCTGCACTTATGAACCAAATTTCTGAGTCCCAGTGTACGGTAACAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTTTTGATAAGTTTCAGGGAAAAAAGAGATAGGCTTAGAATAGAGCATGCAAATGCAGTTAGGGAAGTCCAAGTGCTTAGAAAATTTGGTGAAGCGGATACTTCCTTCTCTTATCAGGTAGAATTCCCTGCATTTTCTTTTGTAGAGATCAATGAGGCAACTCATGATTTCGACCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTGGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTCACGAGAGTCTATCAAAATTCCAACGTCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAATTTGTTAACACTAATTGGAAGCTGTGCGGAGTCTAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATGTCCACTGCTACAGATATATGTTCTGCTCTAATCTTCATTCACTCCAGCAACCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTCGATGCTAACCTTGTTGCCAAACTGAGTGACTTGGGCATTCCTAGTTTAGTCCAGCAAAGTTTGGATTCAGCTGATGCAAACACAATATATAATAACCCAAATGAACATTTGGCGTATGTGGATCCAGAGTATTTACTTACTGGCAAGTTTACACCCGAATCAGATGTATATTCATTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCACTTTTGGGATTAGTAAGGGATGTGAAGTGTGCATTGGAGAAGGAAAACCTTAAAGCAGTTTTGGATTTTTCAGCTGGTGAATGGCCACTTTATCAAACTGAACTGCTGGCATATTTAGCACTGAGGTGTTGTGAAAAGAGTCGGTTGAACAGGCCAGACCTTGTGTCAGAAATTTGGACTGTTCTTGAACCATTCAAAGCTACTCGCATTGACAAACCATATTTGATTTCTAAGAAGCTTCGCCGTGTTCCTTCACATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGGTGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTTAAGCTTGATCACACGGATTTGGTACCTAACTATGCTCTACATAATGCAATTCTGGAGTGGCAACAACAGTAA 2196 0.4189 MGSIVVEDADTDTVYVAVGKNAEKTQQLLHWTVKNFSGKNVCLLHIHRPYSLDSFYRNLSGYEPKDLPIQAFQDQGNQSVHELLDQYILDLVPAGVRACKLLIEMDDIEKGITEAIAQHSIRWLVVGAAADGYNMGKLAKQDSEKAIFIREQALLSCNIWFICKGNLICTRVYSKHTSDIEGGPALLVLNSNTERSTSKSTPDALKYLDSGDMKEIQSISFNRSLNTKRSFNKVADRSKLADLMFHEDEAFESRCAQEIRRRKEVEEQLARSKQEVQKMKNQQDEILEELQMVKDQNSALMNQISESQCTVTEFEEKIISAVDLLISFREKRDRLRIEHANAVREVQVLRKFGEADTSFSYQVEFPAFSFVEINEATHDFDPSWKIGEGRYGSVYKGLLGNMHVAIKMLPSYGHESLSKFQRQVEVLSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKEKNPLPWQIRMSTATDICSALIFIHSSNPCIIHGNLKPSKVLLDANLVAKLSDLGIPSLVQQSLDSADANTIYNNPNEHLAYVDPEYLLTGKFTPESDVYSFGVILLQLLTGRPLLGLVRDVKCALEKENLKAVLDFSAGEWPLYQTELLAYLALRCCEKSRLNRPDLVSEIWTVLEPFKATRIDKPYLISKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03238 731 CDD RING-Ubox_WDSUB1-like 663 718 - -
Viun7g03238 731 SUPERFAMILY RING/U-box 659 731 - -
Viun7g03238 731 Gene3D Phosphorylase Kinase; domain 1 353 452 - -
Viun7g03238 731 Pfam Protein tyrosine and serine/threonine kinase 385 633 IPR001245 GO:0004672|GO:0006468
Viun7g03238 731 CDD STK_N 13 165 - -
Viun7g03238 731 ProSitePatterns Protein kinases ATP-binding region signature. 386 407 IPR017441 GO:0005524
Viun7g03238 731 Coils Coil 255 303 - -
Viun7g03238 731 PANTHER OS02G0152300 PROTEIN 14 727 - -
Viun7g03238 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 731 IPR013083 -
Viun7g03238 731 ProSiteProfiles U-box domain profile. 661 731 IPR003613 GO:0004842|GO:0016567
Viun7g03238 731 SUPERFAMILY Protein kinase-like (PK-like) 356 639 IPR011009 -
Viun7g03238 731 SMART Ubox_2 665 728 IPR003613 GO:0004842|GO:0016567
Viun7g03238 731 Pfam U-box domain 662 730 IPR003613 GO:0004842|GO:0016567
Viun7g03238 731 Gene3D Transferase(Phosphotransferase) domain 1 453 655 - -
Viun7g03238 731 ProSiteProfiles Protein kinase domain profile. 380 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03238 Viun-Chr7 34623486 34631837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03238 12 731 U-box Gene Family AT2G45910 40.402 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun7g03238 PK_Tyr_Ser-Thr 2.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03238 - - pvu:PHAVU_007G072300g 1274.61