LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g03225	ATGCTTACATGGTGGGGAAAATCATCATCAAAAGAAAGCAAGAAGAAATCAAATAAGGAAAGCTTTTTTGACACACTGCACCGGAAATTAAAAATTTCATCGGAAGGTAAACTAAGCACTAGATCTGGAGGATCCCGTAGAAATTGCAATGACTCAGTTTCAGAGAAGGGGGATCGATCTCCGATTGAATCAAGATCACCTTCACCTTCCAAAGTGGCTAGGTGTCAAAGTTTCATTGAAAGACCTCATGCTCAGCCACTTCCTCTTCCTGGTCTGCACCCTTCAAGTGTAGGCCGAGTAGATTCCGAAATTAGCATATCATCAAAATCAAGATTGGAAAAAGTATCCAAACCATCATTGTTTCTTCCACTTCCGACACCTGGATGCATCCGTTGTAAGCCAAACCCTGCAGATTTGGATGGAGATGTGGTCACTGCTTCAGTGTTTAGTGATTGCTCTGCTGACAGTGATGAGCCACAGTCACACAATCGTAGTCCTCTAGTGGCTGACTGTGAGACTGGGACTAGAACTGCTGCTGGCAGTCCTTCCAGTTCAATGCCCAAGGATCAGCCAGTTGTTGCTTCCCAGCTCAATTCAGCAGGAGTAAAAAAATCAGGAAGTATTCTAAGTAATCATACATCTTCTACTTCACCAAAACGTAGGCCTTTACGCAACCATGTTCCAAATCTTCAGGTTCCTCCTCATGGTGCCTTCTACAGTGCTCCAGATAGTTCCTTGTCAAGTCCATCAAGAAGTCCACTGAGAGCATTTGGCACAGATCAGGTGTTGAATTCTGCTTTTTGGGCCGGAAAGCCATATTCAGAGGTCAACTTTGTTGGATCTGGGCATTGCTCTAGTCCAGGTTCAGGTCACAATTCTGGACATAATTCAATGGGAGGGGACATGTCAGGACCTTTATTTTGGCAACCAAGCAGGGGTAGTCCTGAGTATTCTCCTGTACCTAGTCCCAGAATGACTAGCCCTGGTCCTAGCTCTAGAATTCAGAGTGGAGCAGTCACACCTATTCATCCCAAAGCCGGGGGAACACCCATTGAATCACAGACAGGAAGGGTTGATGATGGGAAACAGCAGACTCATCGTTTGCCACTTCCTCCTTTGTCAGTCTCCAATTCCTCACCATTCTCTCATTCAAATTCTGCAGCAACATCTCCGTCTATGCCAAGAAGTCCAGCCAGAGCAGATAATCCAGGCTCTGGCTCACGTTGGAAGAAAGGAAAGCTAATTGGTAGTGGCTCATTTGGACATGTCTATCTTGGCTTCAATAGTGAAAGTGGCGAAATGTGTGCAGTGAAGGAGGTTACCCTGTTTTCAGATGATCCCAAGTCAATGGAAAGTGCTAAGCAATTTATGCAGGAAATTCATTTATTAAGCCGTTTACAGCATCCAAATATTGTTCAGTATTATGGTTCTGAAACAGTTGATGACAAGCTTTACATATACCTTGAATATGTATCTGGTGGCTCCATACACAAACTTCTTCGAGAATATGGGCAGTTTGGTGAACTAGTTATTCGTAGCTATACTCAACAAATTTTGTCAGGGCTTGCTTATTTGCATACTAAAAATACTCTCCATCGGGACATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATATAACAGGGCAATCGTGTCCATTATCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAGGTTATAAAGAACTCTAATGGATGCAATCTTGCAGTAGATATATGGAGTCTTGGATGCACAGTTTTAGAAATGGCAACTACCAAACCTCCTTGGTTTCAGTATGAAGGGGTTGCTGCCATGTTCAAGATTGGTAATAGCAAGGAACTCCCGACAATCCCAGATCATCTCTCAAATGAAGGAAAAGATTTTGTTAGGAAATGTCTTCAGCGTAACCCATATGATCGCCCTTCAGCCAGTGAATTATTGGATCACCCTTTTGTAAAACATGCCGCCCCTTTGGAAAGACCTATTCTGGTTCCTGAAGCATTGGACCCTGTTTCTGGGACTACACAGGGAGCAAAATCTCTGGCCATTGGACAAGCAAAGAATCTTTCTACCTTGGATTCAGATAGACTTTCTGTTCATTCTTCAAGATTTTTGAAAATTAATCCTCATGAAAGTGAAATCCATATTCCAAGGAATATATCTTGCCCCGTATCTCCCATTGGAAGCCCACTTTTGAGGTCAAGATCACCGCAGCACAGGAATGGGAAAATGTCTCCTTCTCCTATATCCAGCCCTCGAACTGCTTCTGGGGCATCCACTCCTCTCGCTGGTGGCAGTGGTGTCATTCCATTTGGGTCTCACATTCCATCAGAGCTGGTTTCCAGTGAAAATGATGTCCTGGTTAAGCAGTTTGCAAGGTCTCTTCATGCAGAGCCATATGATTTTCAGTCAGTCTTGGCAGATCGTGTTGGCCGGCAGTTGCTGCGTGAACATGTTAAGATTAACCCATCCCTTGATCTCACTCCCAACTCATCTTTGCTTAGCCGCCCAAATGGTTTATGA	2562	0.4418	MLTWWGKSSSKESKKKSNKESFFDTLHRKLKISSEGKLSTRSGGSRRNCNDSVSEKGDRSPIESRSPSPSKVARCQSFIERPHAQPLPLPGLHPSSVGRVDSEISISSKSRLEKVSKPSLFLPLPTPGCIRCKPNPADLDGDVVTASVFSDCSADSDEPQSHNRSPLVADCETGTRTAAGSPSSSMPKDQPVVASQLNSAGVKKSGSILSNHTSSTSPKRRPLRNHVPNLQVPPHGAFYSAPDSSLSSPSRSPLRAFGTDQVLNSAFWAGKPYSEVNFVGSGHCSSPGSGHNSGHNSMGGDMSGPLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPKAGGTPIESQTGRVDDGKQQTHRLPLPPLSVSNSSPFSHSNSAATSPSMPRSPARADNPGSGSRWKKGKLIGSGSFGHVYLGFNSESGEMCAVKEVTLFSDDPKSMESAKQFMQEIHLLSRLQHPNIVQYYGSETVDDKLYIYLEYVSGGSIHKLLREYGQFGELVIRSYTQQILSGLAYLHTKNTLHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSFKGTPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWFQYEGVAAMFKIGNSKELPTIPDHLSNEGKDFVRKCLQRNPYDRPSASELLDHPFVKHAAPLERPILVPEALDPVSGTTQGAKSLAIGQAKNLSTLDSDRLSVHSSRFLKINPHESEIHIPRNISCPVSPIGSPLLRSRSPQHRNGKMSPSPISSPRTASGASTPLAGGSGVIPFGSHIPSELVSSENDVLVKQFARSLHAEPYDFQSVLADRVGRQLLREHVKINPSLDLTPNSSLLSRPNGL	853

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g03225	853	MobiDBLite	consensus disorder prediction	1	20	-	-
	Viun7g03225	853	MobiDBLite	consensus disorder prediction	369	396	-	-
	Viun7g03225	853	MobiDBLite	consensus disorder prediction	33	100	-	-
	Viun7g03225	853	ProSiteProfiles	Protein kinase domain profile.	409	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g03225	853	SUPERFAMILY	Protein kinase-like (PK-like)	407	742	IPR011009	-
	Viun7g03225	853	ProSitePatterns	Protein kinases ATP-binding region signature.	415	438	IPR017441	GO:0005524
	Viun7g03225	853	MobiDBLite	consensus disorder prediction	152	252	-	-
	Viun7g03225	853	MobiDBLite	consensus disorder prediction	284	411	-	-
	Viun7g03225	853	Pfam	Protein kinase domain	410	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g03225	853	MobiDBLite	consensus disorder prediction	152	222	-	-
	Viun7g03225	853	FunFam	Mitogen-activated protein kinase kinase kinase	407	689	-	-
	Viun7g03225	853	CDD	STKc_MEKK1_plant	408	665	-	-
	Viun7g03225	853	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	34	674	-	-
	Viun7g03225	853	MobiDBLite	consensus disorder prediction	284	299	-	-
	Viun7g03225	853	MobiDBLite	consensus disorder prediction	744	774	-	-
	Viun7g03225	853	SMART	serkin_6	409	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g03225	853	MobiDBLite	consensus disorder prediction	740	776	-	-
	Viun7g03225	853	MobiDBLite	consensus disorder prediction	36	50	-	-
	Viun7g03225	853	Gene3D	Transferase(Phosphotransferase) domain 1	406	683	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g03225	Viun-Chr7	34587363	34594528	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g03225	2	842	MAP Kinase Kinase Kinase	AT1G63700	58.531	0.0	872

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Viun7g03225		Pkinase	2.4e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g03225	K20717		-	gmx:100797994	1479.54