Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03083 ATGGATCCTTTTAGTGAAGAGTTGCCTCAGTACATACATATAAATCAGAATGAGTTTTTCATGCGAAGGCACAAAAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACACTGACAGTGCATGCGGGGATAGCTGCTTGAATGTTTTAACCAGCACAGAATGCACCCCTGGTTATTGCCCTTGTGATATCTTGTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCTAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATCTTAAGGCAGGACAATTTGTCATCGAATACTGTGGAGAAGTTATATCATGGAAGGAAGCCAAACGTAGATCTCAGGCTTATGATGATCAAGGCCTTAAAGATGCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAATTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTCGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTATGTGGTGCACTCAAATGTTCAGGGTTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGATAGGTACTCTGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCAGTGTCAAATGTTAATGGACGAACTGAATCCTCTTTAGATGTGATGCTTAAAGCTGAGCAACTATCTGAGTCCACTGGTTTCAATGTTCAGTCCCTTGATTCAGTTCAGATGAAAGATTTAGATGTCAAAAAGATTAAAACTGAAGTAGCAGATGAGGATATGCACTTGTACTCCCACGATACTGAACAGGCGCTTTCACAAAAGAATGCAATGATATCACGAATCCGAGGTAATGCTGCAGGCAGAAACTATCACATTGGACCTAGGTCCATGTCTACCAAAAGATCAAGGGCATATAATGGCGGAAGGTTTAAAAATCTCGTAGAGAAGAAAATTGATGCCAAGTTTGCTGCTGGCCTCCTAGCATCCAAGGAAGCACAAGAAGAGATTTTACATTGTGAGAAAATAAAGGATGATGCTACATCTACTCTTGATTCCTTATACGATGAAATACGGCCTGCTATTGAGGAACACGAGAGGGATAGCCAAGACAGTGTATCCACCACTGTCGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAATTGAAGGCTGAGTTTGATCTCTACTCGTCAATTGTGAAAAATGTTGCTTGCACTGCGCATAGGCCACCTGGACAACCAAAACCTACTGAAGTAGATAATGAAAACGAAATTAAGTTCTTGACAGGTTGA 1446 0.4025 MDPFSEELPQYIHINQNEFFMRRHKKQKEEDIAICECKYDADDTDSACGDSCLNVLTSTECTPGYCPCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDLKAGQFVIEYCGEVISWKEAKRRSQAYDDQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNVNGRTESSLDVMLKAEQLSESTGFNVQSLDSVQMKDLDVKKIKTEVADEDMHLYSHDTEQALSQKNAMISRIRGNAAGRNYHIGPRSMSTKRSRAYNGGRFKNLVEKKIDAKFAAGLLASKEAQEEILHCEKIKDDATSTLDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAHRPPGQPKPTEVDNENEIKFLTG 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03083 481 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Viun7g03083 481 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Viun7g03083 481 Gene3D SET domain 2 235 IPR046341 -
Viun7g03083 481 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Viun7g03083 481 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0042054
Viun7g03083 481 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Viun7g03083 481 PANTHER SET DOMAIN PROTEINS 8 466 - -
Viun7g03083 481 Pfam SET domain 94 200 IPR001214 GO:0005515
Viun7g03083 481 FunFam Histone-lysine N-methyltransferase 1 235 - -
Viun7g03083 481 SUPERFAMILY SET domain 9 220 IPR046341 -
Viun7g03083 481 SMART set_7 83 206 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03083 Viun-Chr7 33538932 33546099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03083 65 222 C2H2 Transcription Factor Family AT2G23740 33.708 1.10e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun7g03083 SET 1e-18 No_clan