Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03043 ATGGCAGCAGCGGTTTCTTCACCGATGACTCAGTCTGTGACTGCAACAGCGGCTCCGGCAACTGCATTGGCCGGAGGAACATTTTCAAATGCCTCGCTGTATGTGGGCGATCTCGACGGAAATGTAAATGAGGAGCAACTTTATGATCTTTTCAGTCAGGTTGCTCAGATTGTTTCAATTAGGGTTTGCAGGGATCAGAGCAAGCGATCCTCTCTTGGTTACGCTTATGTCAATTTTTCTAACGCTCAGGACGCAACCAATGCCATGGAACTTTTGAACTTCACTCCTGTTAATGGAAAACCAATTCGAATTATGTTTTCTCAACGTGATCCAAGCATTCGGAAAAGTGGACATGGCAATGTGTTCATCAAGAACCTGGATACGTCAATTGATAACAAAGCATTGCATGACACTTTTGCTGCTTTTGGCACTGTACTTTCTTGTAAGGTGGCTACTGATCACAATACTGGTCTGTCAAAAGGGTACGGTTTTGTTCAGTATGATAATGAAGATTCTGCCCAGAGTGCAATCAAACAGTTGAATGGCATGTTGATCAATGACAAGCAAGTTTACGTCGGACTCTTTATCCGGCGTCAGGCTCGGACAAATGGATCACCCAAATTTACTAATGTCTATGTGAAAAATTTTTCGGAAGCATTCACTGATGAGGACCTCAATAAGCTGTTTAGCTCCTATGGTACAATAACGAGTGCAACCATTATGAAAGATATGAATGGGAAATCTAGATGTTTTGGTTTTGTAAATTTCCAGAGTCCAGATTCAGCAGCTGCTGCAGTTGAAAGGCTAACTGGTACCACCATTAATGACAAGGTTTTATACGTGGGGAGGGCTCAGAAGAAAGCAGAAAGAGAGGCTGAGCTGAAAGCTAAAATTGAGCAGGAAAGAATTAGTAGATATGAAAAATTACAAGGTGCTAATTTGTATTTGAAAAATCTTGATGACAACTTCAGTAATGAAAAGTTGAAAGATCTTTTTTCTGAGTTTGGGACTATAACATCTTGCAAGGTGACTGTCGATTCAAATGGACATAGCAAGGGATCTGGTTTTGTTGCTTTTTCTACCCCAGAGGAAGCAAGTAAAGCTTTGAATGAAATGAACGGCAAGTTGATTGGACGAAAGCCTCTTTATGTTGCCGTGGCCCAGCGCAAAGAAGAGAGGAAAGCTCATTTACAGGCTCATTTTGCTCAAATCCGAACATCGGGTGGAATGACACCTCTGCCTGCTGGCATTCCTGTTTATCATCATCCAGGAGCACCAAGACTTGCTCCTCAACAATTATATTTTGGTCAAGGCAGCCCTGGCTTCATGCCGCCACAGCCTGCTGGATATTCATTCCAGCAGCAAATTTTGCCTGGAATGAGGCCTGGGTTTGCCCCCAATTTCATTACTCCCTATCCCCTTCAAAGGCAGGCTCAGTCTGGACATAGGACAGGAGTTCGACGAAATGGAAATCTTCAACCAATGCAACAGAGCCAGATGATGATACATCGTAATTCCAACCAAGGAGGGTTTCGATACATGCCTAATGGTCGAAATGGTCCAACTATGCCTATGCACTTTGATGGTTCTGGAATTAATGCAGCACCTAATGATGGTCAGCGTTCTGGACCATTGTCTACTACACTTGCATCGGCTCTTGCGTCTGCCACTCCTGAAAATCAGCGCATGATGTTGGGTGAACATCTATATCCTCTCGTGGAGCGTATGACATTAAACCATTACACAGCAAAGGTGACTGGGATGCTACTGGAAATGGACCAGTCCGAAGTAATCAATCTCATCGAATCCCCTGAGGACCTGAAGACAAAGGTGTCTGAGGCTATGCAGGTATTGTATGAGGCTGCACCTGAACCTGGAGTTGCTGATCAGATTGGATCGTTAACCGTGAATGAATGA 1917 0.4382 MAAAVSSPMTQSVTATAAPATALAGGTFSNASLYVGDLDGNVNEEQLYDLFSQVAQIVSIRVCRDQSKRSSLGYAYVNFSNAQDATNAMELLNFTPVNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVATDHNTGLSKGYGFVQYDNEDSAQSAIKQLNGMLINDKQVYVGLFIRRQARTNGSPKFTNVYVKNFSEAFTDEDLNKLFSSYGTITSATIMKDMNGKSRCFGFVNFQSPDSAAAAVERLTGTTINDKVLYVGRAQKKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDNFSNEKLKDLFSEFGTITSCKVTVDSNGHSKGSGFVAFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAHFAQIRTSGGMTPLPAGIPVYHHPGAPRLAPQQLYFGQGSPGFMPPQPAGYSFQQQILPGMRPGFAPNFITPYPLQRQAQSGHRTGVRRNGNLQPMQQSQMMIHRNSNQGGFRYMPNGRNGPTMPMHFDGSGINAAPNDGQRSGPLSTTLASALASATPENQRMMLGEHLYPLVERMTLNHYTAKVTGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLYEAAPEPGVADQIGSLTVNE 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03043 638 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 618 IPR006515 GO:0003723
Viun7g03043 638 Gene3D - 310 409 IPR012677 -
Viun7g03043 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 190 IPR000504 GO:0003723
Viun7g03043 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Viun7g03043 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Viun7g03043 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Viun7g03043 638 SUPERFAMILY RNA-binding domain, RBD 31 200 IPR035979 GO:0003676
Viun7g03043 638 Gene3D - 118 202 IPR012677 -
Viun7g03043 638 Gene3D - 25 117 IPR012677 -
Viun7g03043 638 Pfam Poly-adenylate binding protein, unique domain 553 618 IPR002004 GO:0003723
Viun7g03043 638 Gene3D - 545 622 - -
Viun7g03043 638 CDD RRM2_I_PABPs 117 193 IPR045305 -
Viun7g03043 638 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 545 623 IPR002004 GO:0003723
Viun7g03043 638 FunFam Polyadenylate-binding protein 24 116 - -
Viun7g03043 638 Coils Coil 281 309 - -
Viun7g03043 638 FunFam Polyadenylate-binding protein 117 199 - -
Viun7g03043 638 FunFam Polyadenylate-binding protein 542 624 - -
Viun7g03043 638 SUPERFAMILY RNA-binding domain, RBD 208 393 IPR035979 GO:0003676
Viun7g03043 638 SMART rrm2_1 313 385 IPR003954 GO:0003676
Viun7g03043 638 SMART rrm2_1 32 105 IPR003954 GO:0003676
Viun7g03043 638 SMART rrm2_1 210 282 IPR003954 GO:0003676
Viun7g03043 638 SMART rrm2_1 120 193 IPR003954 GO:0003676
Viun7g03043 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Viun7g03043 638 MobiDBLite consensus disorder prediction 476 513 - -
Viun7g03043 638 SUPERFAMILY PABC (PABP) domain 497 623 IPR036053 GO:0003723
Viun7g03043 638 SMART poly_2 557 621 IPR002004 GO:0003723
Viun7g03043 638 FunFam Polyadenylate-binding protein 200 294 - -
Viun7g03043 638 CDD RRM4_I_PABPs 311 389 - -
Viun7g03043 638 SMART rrm1_1 120 193 IPR000504 GO:0003723
Viun7g03043 638 SMART rrm1_1 32 105 IPR000504 GO:0003723
Viun7g03043 638 SMART rrm1_1 313 385 IPR000504 GO:0003723
Viun7g03043 638 SMART rrm1_1 210 282 IPR000504 GO:0003723
Viun7g03043 638 PANTHER RNA BINDING PROTEIN 30 93 - -
Viun7g03043 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Viun7g03043 638 FunFam Polyadenylate-binding protein 295 400 - -
Viun7g03043 638 Gene3D - 203 309 IPR012677 -
Viun7g03043 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Viun7g03043 638 CDD RRM3_I_PABPs 208 287 - -
Viun7g03043 638 MobiDBLite consensus disorder prediction 476 546 - -
Viun7g03043 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03043 Viun-Chr7 33316993 33321087 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03043 27 622 Eukaryotic Initiation Factors Gene Family AT1G71770 56.494 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03043 K13126 - gmx:100783163 1045.8