Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03020 ATGTCTGAAACAGCTTCCACGACCAAGCCAATGGAAAATGTTCCTTCACTGATTTACAAAAACCCTATTAGGAGAAGCTCTAGGCGATCTACAATGTATCTTGGCGTGAGAAAAAGGCCATGGGGAAGATATGCTGCTGAGATTAGGAACCCTTATACCAAAGAGAGACACTGGTTAGGCACATTTGACACTGCTGAAGAGGCTGCTATAGCCTATGATCTTTCATCTATCAACATTTGTGGTATTAACGCTCGAACCAATTTTCATTACCCTTTTCTCTCTCTTCCGCCACCTCCTTCTATCTCATTGCCTCCTCCACCGCCGCCACCTACCCCGGAGGAGCTGCATCAAAGTGTCGGAGTTTGTCCGGAGATGAATTCTGTTTTCGATGGCGATGATGAATCTCTGGTTATTGCTTCCATTTTGCAAAGCTTTTCTAACTCTGGTAACTGTTCTTTTTAG 462 0.4437 MSETASTTKPMENVPSLIYKNPIRRSSRRSTMYLGVRKRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAIAYDLSSINICGINARTNFHYPFLSLPPPPSISLPPPPPPPTPEELHQSVGVCPEMNSVFDGDDESLVIASILQSFSNSGNCSF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03020 153 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 109 - -
Viun7g03020 153 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Viun7g03020 153 CDD AP2 33 88 IPR001471 GO:0003700|GO:0006355
Viun7g03020 153 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Viun7g03020 153 Pfam AP2 domain 34 76 IPR001471 GO:0003700|GO:0006355
Viun7g03020 153 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Viun7g03020 153 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Viun7g03020 153 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Viun7g03020 153 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Viun7g03020 153 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03020 Viun-Chr7 33181750 33182624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03020 33 105 AP2-EREBP Transcription Factor Family AT1G12890 68.919 1.14e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g03020 AP2 5.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03020 - - var:108324731 253.832