Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02993 ATGTCGGAGAGGGAGGAGGAAACCGGAAAAATGTCGGAAGATTTGAACGCATCATCAAAGTGCAAAAACGTGTTGCCGTACGAGACCCCGGACCTAAACGAGCACTACAGTGTGGTGGATGAGGTGCTGGGAGAAGGGCGCTTGGGCACCACCTACGTCTGCACCCACAAGGAGACAGGGAAGACTTACGCCTGCAAAACCATCCCAAAGGAGAAGCTGAGCAAAGAAGATTACGATGATGTGTGGAGGGAGATTCAGATCCTGCACCATTTGTCGGATTACCCCAACGTCGCAAGGATGCAGGGAAGCTACGAGGACAAGTTTTCGGTGCACATTGTCATGGAGCTGTGTGCTGGGGGTGAGCTTTTTGACAGGATCATTAAGAAGGGGCATTACACCGAACGAGAGGCTGCCAAGTTGATGAAGACAATTGTTGGGGTGGTGGAAGGGTGCCACGCTCATGGGGTTATTCATAGGGATCTCAAGCCTGAGAATCTCTTGTTTGATACTGTCTCCAGGAATGTCACCCTCAAGGTCGTCGGTTTTGGTCTCTCTGTCTTCTTCAAGCCAGGACAAACCTTTAGTGATATAGTAGGAACTTGCCACTATATGCCCCCTGAGGTGTTGTGCAAGCACTATGGACCAGAAGTGGACGTATGGAGCGCTGGTGTTATCCTATACATCTTACTCAGTGGGGTGCCACCTTTCTGGGCTGAGACTGAACTAGGAATTTTCAGACGGATTATAAACGATGAGCTTCAGTTTGTTTCTGAACCGTGGCCAAGTATCTCAGAAAGTGCCAAAGAATTGATAAAGCAGATGTTGGTTAAGGACCCTATGAAAAGAATTTCTGCTCATGAAGTCTTGTGTCACCCTTGGATTGTTAATGATAGTGCTGCCCCGGACAAACCTCTGGATCCTATTGTTTTGACGCACCTAAAGCATTTTTCAACAATGAATAAACTTAAGAAGATGGCATTACGGGTCATTGCTGAAAGACTTTCAGAGGAAGAAATAGGTGGATTGAAAGAGTTATTTAAAGTGATTGACACAGACAACAGTGGGACAATAACTTTTGAGGAACTGAAGGAGGGTTTGAGAAGTATGGGCTCTAATCTCGTGGAATCTGAAATCAAATCCCTTATGGAGGCGGCTGATATAGACAACAGTGGAAGTATAGACTATGGTGAATTTCTTGCTGCTACACTGCACTTGAATAAGATGGAAAGAGAGGAGAATTTGGTTGCTGCTTTTTCCTATTTTGATAAAGATGGTAGTGGCTACATCACCATTGATGAGCTTCTGCAGGCTACCAAGGATTTTGGCCTTGGCGATGTACATCTAGATGAGATGATCAGAGAGATTGATCAAGACAATGATGGCAGAATTGATTATTCAGAGTTTGCAGCAATGATGAAAAGGGTTGATCCGGATGTTGGTAGAAGCAGAACCATGGATGGCAATTTGAACTCCAATATTGCAGATGCTTTTGGAATGAAAAACTCTTCCTCTTTATATGCTACCTGA 1527 0.4512 MSEREEETGKMSEDLNASSKCKNVLPYETPDLNEHYSVVDEVLGEGRLGTTYVCTHKETGKTYACKTIPKEKLSKEDYDDVWREIQILHHLSDYPNVARMQGSYEDKFSVHIVMELCAGGELFDRIIKKGHYTEREAAKLMKTIVGVVEGCHAHGVIHRDLKPENLLFDTVSRNVTLKVVGFGLSVFFKPGQTFSDIVGTCHYMPPEVLCKHYGPEVDVWSAGVILYILLSGVPPFWAETELGIFRRIINDELQFVSEPWPSISESAKELIKQMLVKDPMKRISAHEVLCHPWIVNDSAAPDKPLDPIVLTHLKHFSTMNKLKKMALRVIAERLSEEEIGGLKELFKVIDTDNSGTITFEELKEGLRSMGSNLVESEIKSLMEAADIDNSGSIDYGEFLAATLHLNKMEREENLVAAFSYFDKDGSGYITIDELLQATKDFGLGDVHLDEMIREIDQDNDGRIDYSEFAAMMKRVDPDVGRSRTMDGNLNSNIADAFGMKNSSSLYAT 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02993 508 Pfam EF-hand domain pair 412 473 IPR002048 GO:0005509
Viun7g02993 508 Pfam EF-hand domain pair 342 402 IPR002048 GO:0005509
Viun7g02993 508 Pfam Protein kinase domain 39 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g02993 508 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Viun7g02993 508 FunFam Calcium-dependent protein kinase 5 122 302 - -
Viun7g02993 508 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Viun7g02993 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Viun7g02993 508 ProSiteProfiles EF-hand calcium-binding domain profile. 337 372 IPR002048 GO:0005509
Viun7g02993 508 ProSitePatterns EF-hand calcium-binding domain. 350 362 IPR018247 -
Viun7g02993 508 CDD EFh 342 401 IPR002048 GO:0005509
Viun7g02993 508 Gene3D Phosphorylase Kinase; domain 1 40 121 - -
Viun7g02993 508 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Viun7g02993 508 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Viun7g02993 508 SUPERFAMILY Protein kinase-like (PK-like) 20 319 IPR011009 -
Viun7g02993 508 SMART efh_1 413 441 IPR002048 GO:0005509
Viun7g02993 508 SMART efh_1 341 369 IPR002048 GO:0005509
Viun7g02993 508 SMART efh_1 377 405 IPR002048 GO:0005509
Viun7g02993 508 SMART efh_1 447 475 IPR002048 GO:0005509
Viun7g02993 508 Gene3D Transferase(Phosphotransferase) domain 1 122 303 - -
Viun7g02993 508 CDD STKc_CAMK 38 293 - -
Viun7g02993 508 Gene3D - 304 478 - -
Viun7g02993 508 ProSiteProfiles Protein kinase domain profile. 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g02993 508 SMART serkin_6 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g02993 508 SUPERFAMILY EF-hand 333 476 IPR011992 -
Viun7g02993 508 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 468 - -
Viun7g02993 508 FunFam Calcium-dependent protein kinase 1 302 476 - -
Viun7g02993 508 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Viun7g02993 508 CDD EFh 414 473 IPR002048 GO:0005509
Viun7g02993 508 ProSiteProfiles EF-hand calcium-binding domain profile. 447 478 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02993 Viun-Chr7 32902093 32906956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02993 13 504 EF-hand Containing Proteins AT4G09570 70.588 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun7g02993 Pkinase 9.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02993 K13412 - gmx:547887 785.408