Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02978 ATGGATCCAAAAGGAGGCTTATGTGCTAATAACTGCAAAACGTCCTCAGAACCCCCTCCTTTCTATGGTTTCGGAATTGAATCACCTTTCAATGAATTCAACCCTCCCTCTCCTGCAATCCAATCTGTACTTCCAGGTCAATCTAACACAGATGTTGAGATCCCTGATCGAGAAAATTGTCTACTAAGTGACTCATCAAATACCAGCAAGCTCCAAGATTGGAATCCAAGTGCAATGTTGAACAATCTTTCGTTCCTTGAAGAAAAGATTCACCAGCTCCGGGATCTAGTGCATTTAATTGTCAATAAAAAGTGCCAACCCTTTGGACAATCTCATGAACTAGTGACTCAGGAACAGCAGCTTGTCACAGCTGATCTTACATCAATTATTGTTCAACTGATCTCTACTGCTGGTAGTCTTCTCCCCTCTGTTAGGCACACCCTTACAAATACAAATCCCTTGGATCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGGACCAAGTAGTGGGATTAACCAACAAAATAACAGTGGAAATAAACTGTTTGATAAGTCCACTCCGCATGATCTACCAAATACCTGTGAAATGGAGCAAAACTACAACATGGAAGAACATGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAGTCTTCCACCCGGTTCCTATGAGATTCTACAGTTAGAAAAAGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCACATAAAGAAATCGGGTCTGAACCGAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTGAAGACTATTTTGTGTGTCAAAAACCACTACAAGAGAACGCACTGTGACAAGAGCTATACTTGCAGTAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCAGCTATTCCTTTGGATGACATCAAAGGAGTGGCCGAGCCACCTGATCCCCAGAACAGAGAATGCAGCAATAAGGTAGGAAGTGTGAACTTCTGTTTTGGATCAAAGCCTTCAAGTGAAAATGTAGTTCAAAACATGATGGATATGAAAGGTAATATTGATGATCCTATGAATTATTTCTCATCGCTGAACTTCGAAGGCTGTAACTTTGGGGCGTTTAGTGAATTACCTCAAACTCCATTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGCTCCTAAATTTGGTGGCGGTGAATCAAGTTCCGACAATCTGTTGTGA 1485 0.4195 MDPKGGLCANNCKTSSEPPPFYGFGIESPFNEFNPPSPAIQSVLPGQSNTDVEIPDRENCLLSDSSNTSKLQDWNPSAMLNNLSFLEEKIHQLRDLVHLIVNKKCQPFGQSHELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRHTLTNTNPLDQLHGINLPFGSGPSSGINQQNNSGNKLFDKSTPHDLPNTCEMEQNYNMEEHEPKDEEDVDEGESLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKEIGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDIKGVAEPPDPQNRECSNKVGSVNFCFGSKPSSENVVQNMMDMKGNIDDPMNYFSSLNFEGCNFGAFSELPQTPFEDSEGSFSFLMSGSFNYAPKFGGGESSSDNLL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02978 494 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 66 459 IPR044300 GO:0010044|GO:0010447
Viun7g02978 494 Gene3D Classic Zinc Finger 225 295 - -
Viun7g02978 494 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Viun7g02978 494 SMART c2h2final6 241 263 IPR013087 -
Viun7g02978 494 SMART c2h2final6 290 323 IPR013087 -
Viun7g02978 494 SMART c2h2final6 328 350 IPR013087 -
Viun7g02978 494 SUPERFAMILY beta-beta-alpha zinc fingers 239 266 IPR036236 -
Viun7g02978 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Viun7g02978 494 MobiDBLite consensus disorder prediction 165 191 - -
Viun7g02978 494 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02978 Viun-Chr7 32797554 32800411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02978 209 494 C2H2 Transcription Factor Family AT1G34370 68.493 2.50e-136 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g02978 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02978 - - gmx:100801536 889.797