Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02955 ATGGATTACAAACTCAAAACCTTAACAACACCAACAACTTCTTCTTCTCCACCAATCCCAATCCATGTTCCCACTATGCTCTCAAACTCTCCTCCATCTTCATCTTCTTCACCTCCCTCACACTCCCCCACACCCTTTCCTTCACCCTCTCAGGGCTCTCCCCCCGCTGCTCCGCCTTCTCCGCCGCCGCCGGTGGTGGTTAGCCCCTGTGCCGCCTGCAAGATTCTCCGCCGCAGGTGCGTCGAGAAGTGTGTCTTGGCTCCCTATTTCCCCCCCACCGATCCCCTCAAATTCACCATTGCTCACAGAGTCTTCGGAGCCAGCAACATCATCAAGTTCTTGCAGGAGCTACCAGAGTCCCAGAGAGCAGATGCTGTGAGCAGCATGGTTTATGAGGCAAATGCTAGGATCAGAGACCCTGTTTATGGGTGTGCAGGTGCAATATGCCAACTTCAGAAGCAAGTGAGCGAGCTTCAAGCACAGTTGGCGAAAGCACAGGCTGAGCTAGTGAACATGCAGTGCCAACAAGCGAATTTGGTGGCTCTAATTTGCATGGAAATGAGTGAATCGCAGGAGCAGCACATGGTGCAGCCTCAACCTCACATTGACATGAGTTGCTTCATAGAGGACAACAGTTTCGGAACTGCTTGGGAGCCTCTTTGGACATGA 669 0.5247 MDYKLKTLTTPTTSSSPPIPIHVPTMLSNSPPSSSSSPPSHSPTPFPSPSQGSPPAAPPSPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSESQEQHMVQPQPHIDMSCFIEDNSFGTAWEPLWT 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02955 222 Coils Coil 148 175 - -
Viun7g02955 222 Pfam Lateral organ boundaries (LOB) domain 69 166 IPR004883 -
Viun7g02955 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 68 192 - -
Viun7g02955 222 MobiDBLite consensus disorder prediction 1 61 - -
Viun7g02955 222 ProSiteProfiles LOB domain profile. 68 169 IPR004883 -
Viun7g02955 222 MobiDBLite consensus disorder prediction 36 61 - -
Viun7g02955 222 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02955 Viun-Chr7 32621745 32623184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02955 65 222 AS2 family AT1G07900 71.779 1.40e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun7g02955 LOB 2.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02955 - - vra:106771364 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02955 7 32621745 32623184 Viun7g02955 7 32621745 32623184 ECH