Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02899 ATGGTTGGACCTAACTTCATGGATGAGATAGACTGCGGTAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCTGTGGAGGATGTCGACGGTGGCGCCCCAACCTTGCCCTCTGTCGCCGCCGCTGCAGCCGGAAACTGCAACTCGCTGGCAAGCATCTGGCCCGCTGGGGCCGACTCGTTTCCCGGTTCCGACTCGGTGTTCTCCGGCAACAGCGCTTCGGACCTCTCCGCCGAGCTCTCAGTTCCGTACGAAGACATTGTGCAATTGGAATGGCTGTCGAACTTTGTGGAGGATTCGTTTTGTGGTGGGAGCTTGACCATGAAGAAAGTGGAAGAGCCATCGTGCACCACAAAGGAGGACTCAGTGCACAACCAATTCCACACATCAAGCCCAGTTTCTGTTCTTGAGAGCAGCAGTTCTTGCTCCGGGGGAAAGACGGTTCCGGCGCCGCCACGCAGCCCGGAGGTTTACATCCCTGTGCCGTGTGGACGCGCACGCAGCAAGCGTCCACGTCCTGCCACCTTCAATCCCCGCCCTGCCATGAACCTCATTTCCCCTGCCTCCTCCTTTGTCGGGGAGAACATGCAGCCAAATGTAATTTCATCGAAGGCGTCTTCAGACTCTGAGAATTTCGCCGAGTCTCAACTTGTGGCAAAGATGCCAAAGCAAGGGTGTGGAGAGCCAAAGAAAAAGAAGAAAGTGAAGGTGACAGTTCCTGCAGGAGGTGGCGGTGGTGGTGGTGATAGCAACCAGAACGGGTTGCAAGCGGTTAGAAAATGCATGCATTGTGAAATAACGAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTGTGCAATGCATGCGGTGTTCGTTTCAAGTCCGGGAGGCTGTACCCGGAGTATCGCCCAGCGGCAAGCCCAACCTTTTGTCCATCTCTGCACTCCAATTCCCACAAGAAGGTGCTGGAAATGAGATGCAGGGGCATCGAAAAATCTGGTTTTGCAATGAATAACGTAGCTGCTTCACCCGAACTCATTCCGAACACTAACAGCAGCCTCAGCCTGGAGTACATTTGA 1074 0.5456 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGAPTLPSVAAAAAGNCNSLASIWPAGADSFPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMKKVEEPSCTTKEDSVHNQFHTSSPVSVLESSSSCSGGKTVPAPPRSPEVYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENMQPNVISSKASSDSENFAESQLVAKMPKQGCGEPKKKKKVKVTVPAGGGGGGGDSNQNGLQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGRLYPEYRPAASPTFCPSLHSNSHKKVLEMRCRGIEKSGFAMNNVAASPELIPNTNSSLSLEYI 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02899 357 CDD ZnF_GATA 261 308 IPR000679 GO:0006355|GO:0043565
Viun7g02899 357 SMART GATA_3 256 306 IPR000679 GO:0006355|GO:0043565
Viun7g02899 357 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 260 319 - -
Viun7g02899 357 ProSitePatterns GATA-type zinc finger domain. 262 287 IPR000679 GO:0006355|GO:0043565
Viun7g02899 357 FunFam GATA transcription factor 252 338 - -
Viun7g02899 357 Pfam GATA zinc finger 262 295 IPR000679 GO:0006355|GO:0043565
Viun7g02899 357 MobiDBLite consensus disorder prediction 221 252 - -
Viun7g02899 357 PANTHER GATA TRANSCRIPTION FACTOR 16 325 - -
Viun7g02899 357 MobiDBLite consensus disorder prediction 163 182 - -
Viun7g02899 357 PIRSF Txn_fac_GATA_plant 3 350 IPR016679 GO:0003677|GO:0005634|GO:0045893
Viun7g02899 357 Gene3D - 257 306 IPR013088 GO:0006355|GO:0008270
Viun7g02899 357 ProSiteProfiles GATA-type zinc finger domain profile. 256 292 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02899 Viun-Chr7 32252498 32255932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02899 19 324 C2C2-Gata Transcription Factor Family AT4G32890 37.812 3.07e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun7g02899 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02899 - - gmx:100815693 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02899 7 32252498 32255932 Viun7g02899 7 32252498 32255932 ECH
Viun4g01596 4 28758060 28763419 Viun7g02899 7 32252498 32255932 PCT