Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02892 ATGTTGGTGGACTTACAAATATTTGCAACACCACGAATAACTTTAAGACCTTTGGTGCCTACATTTCCATGTTTTGCAAATATTGTGGTATCTTTGTTGGAGAAGCCTCACGTGGACTTTGGGATGAAAGTATATGGAGGGGATATCATGTCAATACCTGGTCTCTATAGATTTGTGCAGGATACAATAAAAAAACAAGTTGCAAATCTCTATCTCTGGCCTCGAACCCTGGAAATTCCTATTCTTGATGAATCAATGGTGGTAATGAAGAAGCCTGTGGGGATATTACATGTGAATGTGGTTCGTGCTCAGAAGCTCTTAAAGATGGATTTGTTAGGAACTTCTGATCCTTACGTTAAACTAAGTCTTACAGGAGACAAACTTCCAGCAAAGAAAACCACTGTCAAGAGAAAGAATTTGAATCCAGTGTGGAATGAGAAGTTCAAGATTGTTGTAAAAGACCCTCAATCTCAAGTTCTTCAATTACAAGTCTATGACTGGGACAAGGTTGGTGCACATGATAAGCTGGGAATGCAGTTGGTCCCTCTGAAGCTTCTTAAGCCGTATGAGAATAAAGAGTTCACACTTGATTTACTGAAGGACACAAATCTGAGCGAAACTCCAAACAAGAAGCCCAGAGGAAAAATTGTGGTGGACTTGACTTTTGTTCCTTTCAAAGAAGATAGCAGCAAGTTTGGTGGACCTTCTGAAGGATATAGCAGAAAGGAAAGTGGATTTGATGTTGTATCCGATGATGAGGTTCAAGAAGGAGCAGGTTTGCTTTCAATTGTTATAATAGAGGCAGAAGAGGTTGAGGGGGAACATCACAACAACCCATTTGCAGTGCTGACCTTTAGAGGGGAAAAGAAGAGAACAAAGACGATGAAGAAAACTCGTCACCCGCTATGGAATGAAGAATTCCAATTCATGCTAGAGGAGCCTCCTCAACATGAGAAGATACACATTGAGGTCCTGAGCAAGAGGAAGAACTTCAGTTTTCTGTCAAAGCAAGAAAAACTGGGGCATGTGGAGATTAACCTAAGGGATGTGGTGCACAATGGTCGCATCAATGAGAAATACAATCTTATAAATTCAAGGAATGGAGTGATGCATGTTGAGATAAGATGGAAGGTGGTTTAA 1140 0.4053 MLVDLQIFATPRITLRPLVPTFPCFANIVVSLLEKPHVDFGMKVYGGDIMSIPGLYRFVQDTIKKQVANLYLWPRTLEIPILDESMVVMKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPAKKTTVKRKNLNPVWNEKFKIVVKDPQSQVLQLQVYDWDKVGAHDKLGMQLVPLKLLKPYENKEFTLDLLKDTNLSETPNKKPRGKIVVDLTFVPFKEDSSKFGGPSEGYSRKESGFDVVSDDEVQEGAGLLSIVIIEAEEVEGEHHNNPFAVLTFRGEKKRTKTMKKTRHPLWNEEFQFMLEEPPQHEKIHIEVLSKRKNFSFLSKQEKLGHVEINLRDVVHNGRINEKYNLINSRNGVMHVEIRWKVV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02892 379 PRINTS C2 domain signature 138 151 IPR000008 -
Viun7g02892 379 PRINTS C2 domain signature 111 123 IPR000008 -
Viun7g02892 379 PRINTS C2 domain signature 160 168 IPR000008 -
Viun7g02892 379 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 82 IPR031468 GO:0008289
Viun7g02892 379 SMART C2_3c 260 359 IPR000008 -
Viun7g02892 379 SMART C2_3c 95 195 IPR000008 -
Viun7g02892 379 Gene3D C2 domain 260 379 IPR035892 -
Viun7g02892 379 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 91 226 IPR035892 -
Viun7g02892 379 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 2 376 IPR045050 GO:0008289
Viun7g02892 379 ProSiteProfiles C2 domain profile. 240 360 IPR000008 -
Viun7g02892 379 Pfam C2 domain 94 192 IPR000008 -
Viun7g02892 379 Pfam C2 domain 260 362 IPR000008 -
Viun7g02892 379 FunFam Synaptotagmin-2 isoform A 89 245 - -
Viun7g02892 379 ProSiteProfiles C2 domain profile. 73 196 IPR000008 -
Viun7g02892 379 FunFam Extended synaptotagmin-2 260 378 - -
Viun7g02892 379 CDD C2 261 359 - -
Viun7g02892 379 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 259 376 IPR035892 -
Viun7g02892 379 Gene3D C2 domain 89 244 IPR035892 -
Viun7g02892 379 CDD C2 96 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02892 Viun-Chr7 32180928 32183956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02892 93 177 C2H2 Transcription Factor Family AT4G05330 41.176 2.02e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02892 - - gmx:100813029 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02892 7 32180928 32183956 Viun7g02892 7 32180928 32183956 ECH