Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02891 ATGGGGTTGCTCAGCAGTTTCTTCGGGATTATCGGTTTTACTCTTGGAATACCTCTTGGCCTCCTCGTGGGCTTCTTTCTCTTTGTCTACTCAGAAACCAAACACGTCAAGGACCCTGTTGTTAGGCCGATTAGTGAATTGGGCCCAAATGCTTTGGAGGAACTTCTACCAGAGATTCCTCTCTGGGTGAAGACGCCTGAATTCGAACGAATTGATTGGTTGAACAAGTTTTTGTCGGATATGTGGCCTTACTTAGACACGGCAATCTGTAAGATTATTAGAAGCACGGCACAGCCGATATTTGCTGAGTACATTGGGAAGTATCAGATCAAAGCAATTGAGTTTGACAAGTTAAGTCTTGGTACTCTTCCTCCTACTGTCTGCGGTATGAAAGTTGTAGAAACAAATGAAAAGGAATTGGTGATGGAACAAGTTATCAAATGGGCTGGCAATCCAAACATAGTGTTGTCATTGTATGTGTCATCTTTGAAGATCACCGTTCAGTTGGTGGACTTACAAATATTTGCAACACCACGAATAACTTTAAGACCTTTGGTGCCTACATTTCCATGTTTTGCAAATATTGTGGTATCTTTGTTGGAGAAGCCTCACGTGGACTTTGGGATGAAAGTATATGGAGGGGATATCATGTCAATACCTGGTCTCTATAGATTTGTGCAGGATACAATAAAAAAACAAGTTGCAAATCTCTATCTCTGGCCTCGAACCCTGGAAATTCCTATTCTTGATGAATCAATGGTGGTAATGAAGAAGCCTGTGGGGATATTACATGTGAATGTGGTTCGTGCTCAGAAGCTCTTAAAGATGGATTTGTTAGGAACTTCTGATCCTTACGTTAAACTAAGTCTTACAGGAGACAAACTTCCAGCAAAGAAAACCACTGTCAAGAGAAAGAATTTGAATCCAGTGTGGAATGAGAAGTTCAAGATTGTTGTAAAAGACCCTCAATCTCAAGTTCTTCAATTACAAGTCTATGACTGGGACAAGGTTGGTGCACATGATAAGCTGGGAATGCAGTTGGTCCCTCTGAAGCTTCTTAAGCCGTATGAGAATAAAGAGTTCACACTTGATTTACTGAAGGACACAAATCTGAGCGAAACTCCAAACAAGAAGCCCAGAGGAAAAATTGTGGTGGACTTGACTTTTGTTCCTTTCAAAGAAGATAGCAGCAAGTTTGGTGGACCTTCTGAAGGATATAGCAGAAAGGAAAGTGGATTTGATGTTGTATCCGATGATGAGGTTCAAGAAGGAGCAGGTTTGCTTTCAATTGTTATAATAGAGGCAGAAGAGGTTGAGGGGGAACATCACAACAACCCATTTGCAGTGCTGACCTTTAGAGGGGAAAAGAAGAGAACAAAGACGATGAAGAAAACTCGTCACCCGCTATGGAATGAAGAATTCCAATTCATGCTAGAGGAGCCTCCTCAACATGAGAAGATACACATTGAGGTCCTGAGCAAGAGGAAGAACTTCAGTTTTCTGTCAAAGCAAGAAAAACTGGGGCATGTGGAGATTAACCTAAGGGATGTGGTGCACAATGGTCGCATCAATGAGAAATACAATCTTATAAATTCAAGGAATGGAGTGATGCATGTTGAGATAAGATGGAAGGTGGTTTAA 1641 0.4132 MGLLSSFFGIIGFTLGIPLGLLVGFFLFVYSETKHVKDPVVRPISELGPNALEELLPEIPLWVKTPEFERIDWLNKFLSDMWPYLDTAICKIIRSTAQPIFAEYIGKYQIKAIEFDKLSLGTLPPTVCGMKVVETNEKELVMEQVIKWAGNPNIVLSLYVSSLKITVQLVDLQIFATPRITLRPLVPTFPCFANIVVSLLEKPHVDFGMKVYGGDIMSIPGLYRFVQDTIKKQVANLYLWPRTLEIPILDESMVVMKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPAKKTTVKRKNLNPVWNEKFKIVVKDPQSQVLQLQVYDWDKVGAHDKLGMQLVPLKLLKPYENKEFTLDLLKDTNLSETPNKKPRGKIVVDLTFVPFKEDSSKFGGPSEGYSRKESGFDVVSDDEVQEGAGLLSIVIIEAEEVEGEHHNNPFAVLTFRGEKKRTKTMKKTRHPLWNEEFQFMLEEPPQHEKIHIEVLSKRKNFSFLSKQEKLGHVEINLRDVVHNGRINEKYNLINSRNGVMHVEIRWKVV 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02891 546 FunFam Synaptotagmin-2 isoform A 256 412 - -
Viun7g02891 546 Pfam C2 domain 261 359 IPR000008 -
Viun7g02891 546 Pfam C2 domain 427 529 IPR000008 -
Viun7g02891 546 FunFam Extended synaptotagmin-2 427 545 - -
Viun7g02891 546 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 426 543 IPR035892 -
Viun7g02891 546 PRINTS C2 domain signature 278 290 IPR000008 -
Viun7g02891 546 PRINTS C2 domain signature 327 335 IPR000008 -
Viun7g02891 546 PRINTS C2 domain signature 305 318 IPR000008 -
Viun7g02891 546 CDD SMP_SYT 60 248 - -
Viun7g02891 546 SMART C2_3c 262 362 IPR000008 -
Viun7g02891 546 SMART C2_3c 427 526 IPR000008 -
Viun7g02891 546 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Viun7g02891 546 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 69 248 IPR039010 -
Viun7g02891 546 ProSiteProfiles C2 domain profile. 407 527 IPR000008 -
Viun7g02891 546 Gene3D C2 domain 427 546 IPR035892 -
Viun7g02891 546 Gene3D C2 domain 256 410 IPR035892 -
Viun7g02891 546 CDD C2 428 526 - -
Viun7g02891 546 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 258 393 IPR035892 -
Viun7g02891 546 CDD C2 263 365 - -
Viun7g02891 546 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Viun7g02891 546 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 5 543 IPR045050 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02891 Viun-Chr7 32179183 32183956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02891 260 344 C2H2 Transcription Factor Family AT4G05330 41.176 5.94e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02891 - - gmx:100813029 991.49