Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02890 ATGGAATATTCCAATGGAAGCCACAGCAATGGCAATGGTTCGTTCAACCTTTGCAATGGCGCCAGCGACCCACTTAACTGGGGCATGGCTGCAGAAGCTTTGAAAGGTAGCCACCTGGACGAGGTGAAGCGCATGGTGGAGGACTACCGTAACCCCTTGGTCACGTTAGGTGGGAAGACCCTCACCGTGTCTCAGGTGGCGGCGGTTGCCACCTGCCATGACCGCCGCGTCACGGTGGAGCTCGCGGGGGAGAGCCGGCGGGGAGTGAAGGCGAGCAGTGATTGGGTGATTGATAGCATGAGCAGAGGCACCGATAGCTACGGAGTCACCACGGGCTTCGGTGCAACCTCACACCGGAGAACCAAGCAAGGTGGTGCCCTCCAAAACGAACTCATCAGATTTTTGAATGCCGGCATTTTCGGTAATGGTACAGAGGCTTCTCATACATTACCTTATTCATCTACAAGGGCAGCTATGTTGGTTAGGGTTAACACTTTGCTTCAAGGATATTCAGGCATTAGATTCGAAATTATGGAGGCTATTACCAAGTTTTTAAATCACAACATAACTCCATGTCTTCCACTACGAGGTACAATCACTGCATCAGGTGACTTGGTTCCTTTGTCCTATGTTGCTGGTCTTTTAATCGGAAGACCAAACTCCAAGTCAATTGGACCCAATGGAGAAGTACTCAATGCTAAAGATGCCTTTAAATTAGCTGAAATTGATGGAGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTGGTTAATGGCACTGCAGTGGGATCTGGTTTGGCTTCCATTGTTCTTTTTGAGGCAAACTTACTTGTTGTTCTTACTGAAGTTTTGTCTGCAATCTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGACCATTTGACTCATAAATTGAAGCACCACCCTGGTCAAATTGAAGCTGCAGCTATAATGGAACACATACTAGATGGAAGCTCATACATTAAGGAAGCACAAAAGTTACATGAGATTGATCCACTTCAAAAGCCAAAGCAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACAGATTGAAGTAATCAGACATGCAACCAAGATGATTGAAAGAGAGATAAACTCTGTTAATGATAACCCCTTGATCGATGTTTCAAGGAACAAGGCACTTCATGGGGGTAATTTCCAAGGTACTCCAATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCATCAATTGGGAAGCTTATGTTTGCCCAATTCTCTGAACTTGTGAATGACTTCTACAATAATGGTTTACCTTCAAATCTAACAGCTGGTCGCAATCCAAGCTTAGATTATGGATTCAAAGGTGCTGAAATAGCAATGGCATCATACTGTTCAGAACTTCAGTATCTGGCGAACCCTGTCACTAATCACGTGCAGAGTGCTGAGCAACATAACCAAGATGTGAATTCCTTAGGCTTGGTTTCCTCAAGAAAGACTGCTGAAGCAGTAGAAATATTAAAGCTCATGTCTTCCACTTTTTTAGTTGCATTATGTCAAGCAATTGATCTACGACATTTAGAGGAAAACATGAAGAACGCTGTTAAGAACGCTGTGAGTCAAGTGGCCAAAAGAGTTCTCACAACTGGCATCAATGGTGAGTTACACCCTTCTAGATTCTGTGAGAAGGACTTGCTTAAAATTGTTGATCATGAATACGTCTTCGCTTACATTGATGACCCCTGTAGTGTAACTTACCCTTTGATGCAAAAGCTGAGATCAGTTCTGGTTGATCATGCATTGCAAAATGGTGAGAAAGAGGCAAGTTCAAGTACCTCAATCTTCCATAAGATAAGAGCCTTTGAGGAAGAACTCATAACCCTTTTGCCCAAGGAGGTAGAAAATGCTAGGGTTGAAGTTGAGAATGGAAATTCAAGTATTCCTAATAGAATTAAAGAATGCAGGTCTTACCCATTATATAAGTTTGTGAGAGAAAGCTTGGGTACAAGTTTGCTAACAGGGGAGAAGGTGAAGTCACCTGGTGAGGAATGTGACAAGGTTTTTACTGCATTATGTGAAGGAAAGTTTATTGATCCTATGATGGATTGCCTAAAGAAGTGGAATGGTTCTCCTCTACCAATATGCTAA 2148 0.4339 MEYSNGSHSNGNGSFNLCNGASDPLNWGMAAEALKGSHLDEVKRMVEDYRNPLVTLGGKTLTVSQVAAVATCHDRRVTVELAGESRRGVKASSDWVIDSMSRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTEASHTLPYSSTRAAMLVRVNTLLQGYSGIRFEIMEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGEVLNAKDAFKLAEIDGGFFELQPKEGLALVNGTAVGSGLASIVLFEANLLVVLTEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKEAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLVSSRKTAEAVEILKLMSSTFLVALCQAIDLRHLEENMKNAVKNAVSQVAKRVLTTGINGELHPSRFCEKDLLKIVDHEYVFAYIDDPCSVTYPLMQKLRSVLVDHALQNGEKEASSSTSIFHKIRAFEEELITLLPKEVENARVEVENGNSSIPNRIKECRSYPLYKFVRESLGTSLLTGEKVKSPGEECDKVFTALCEGKFIDPMMDCLKKWNGSPLPIC 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02890 715 PANTHER HISTIDINE AMMONIA-LYASE 16 715 IPR001106 -
Viun7g02890 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Viun7g02890 715 FunFam Phenylalanine ammonia-lyase 14 261 - -
Viun7g02890 715 Pfam Aromatic amino acid lyase 61 541 IPR001106 -
Viun7g02890 715 CDD PAL-HAL 59 525 IPR001106 -
Viun7g02890 715 Gene3D Fumarase/aspartase (Central domain) 262 709 - -
Viun7g02890 715 Gene3D - 528 649 IPR023144 -
Viun7g02890 715 Gene3D - 15 261 IPR024083 -
Viun7g02890 715 FunFam Phenylalanine ammonia-lyase 262 574 - -
Viun7g02890 715 SUPERFAMILY L-aspartase-like 23 715 IPR008948 GO:0003824
Viun7g02890 715 NCBIfam phenylalanine ammonia-lyase 23 705 IPR005922 GO:0005737|GO:0006559|GO:0016841
Viun7g02890 715 FunFam Phenylalanine ammonia-lyase 528 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02890 Viun-Chr7 32140322 32145880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02890 5 715 Monolignol Biosynthesis Gene Families AT2G37040 79.668 0.0 1208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02890 K10775 - gmx:100801470 1293.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00987 7 9900253 9904967 Viun7g02890 7 32140322 32145880 ECH
Viun7g02890 7 32140322 32145880 Viun7g02890 7 32140322 32145880 ECH