Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02811 ATGCAGAAAACATACTCTTTCTCCTGCATGTCCTCTTGTGGCAGTGATAGTGCCAGCTTTGAAGCTGACGAGAATGGCAATGAAGATTCCATTTCCCTCTCCCTTGGCCCTCCTTGCCACCACAAATCCAAACTCCTTAACCCAAAACACACTTCTGCTCTGCGTGCTCATCAGAAAAACCCTAACTCTGATGACCCCACCGCTGTAACAGTTGCCCTCCACATTGGCCTTCCCACCACCGCTACCAAACCTTCTTCCACTCCGCCTCATGGCCGATATTGGATCCCTACTACTCAACAAATCCTTATTGGACCAACTCAATTCTCTTGCACGGTCTGTAACAAAACGTTCACCCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCAGAGTATAGGAAAGGGTCGGAGTCATTGAGAGGGTCAAAAGCAGGTTCTTCGATGCTGAGGCTACCCTGCTATTGCTGTGAAGAGGGTTGCAGAAACAACATAAACTATCCGAGGTCAAGGCCACTGAAGGATTTCAGGACCCTCCAAACACACTACAAGAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGGAAGTGTAACAAGGCATTTGCAGTGAGAGGTGATTGGAGAACACACGAGAAGAATTGTGGGAGGCTTTGGTTCTGCATCTGTGGTTCTGATTTCAAACACAAGCGGTCCCTGAAAGACCATGTCCGTGCATTCGGCAATGGCCATGCTCCACACAGCTTGGGTGAAGAAAGAGATGATGAGAGTGAAATGGTGTTTTTAGTTTGA 792 0.4836 MQKTYSFSCMSSCGSDSASFEADENGNEDSISLSLGPPCHHKSKLLNPKHTSALRAHQKNPNSDDPTAVTVALHIGLPTTATKPSSTPPHGRYWIPTTQQILIGPTQFSCTVCNKTFTRFNNMQMHMWGHGSEYRKGSESLRGSKAGSSMLRLPCYCCEEGCRNNINYPRSRPLKDFRTLQTHYKRKHGGKPFECRKCNKAFAVRGDWRTHEKNCGRLWFCICGSDFKHKRSLKDHVRAFGNGHAPHSLGEERDDESEMVFLV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02811 263 PANTHER ZINC FINGER PROTEIN WIP2 21 252 IPR043584 GO:0003700|GO:0010468
Viun7g02811 263 Gene3D Classic Zinc Finger 132 218 - -
Viun7g02811 263 FunFam Zinc finger protein WIP2 162 244 - -
Viun7g02811 263 SUPERFAMILY beta-beta-alpha zinc fingers 178 213 IPR036236 -
Viun7g02811 263 SMART c2h2final6 108 130 IPR013087 -
Viun7g02811 263 SMART c2h2final6 156 188 IPR013087 -
Viun7g02811 263 SMART c2h2final6 193 213 IPR013087 -
Viun7g02811 263 Gene3D Classic Zinc Finger 107 130 - -
Viun7g02811 263 MobiDBLite consensus disorder prediction 1 32 - -
Viun7g02811 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Viun7g02811 263 MobiDBLite consensus disorder prediction 1 34 - -
Viun7g02811 263 SUPERFAMILY beta-beta-alpha zinc fingers 95 131 IPR036236 -
Viun7g02811 263 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02811 Viun-Chr7 31427980 31429454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02811 26 251 C2H2 Transcription Factor Family AT1G13290 66.809 4.84e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g02811 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02811 - - gmx:100784037 454.136