Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02768 ATGGGTAAGAATGAAGAGAACGATGCTCTTACGAAGAACAAACCTTCCACTGAAAAGGATATTTTGTCTGAGCTTGAGTTGAAAATGAAAAAGTATCTGAGAGGAGAAAGTGCTAATTTGGAGGGTTTGAAGGATAAAAAGCTGAAGGGTCAACTAGCTATTAAAGAGCAGTTATATGGAAAATCTGCACAAGCTGCTGCCAAGGCCGAGAAGTGGCTTATGCCTAGTGAAGGAGGTTATCTGGAGGCTGAAGGCTTGGAAAAGACATGGAGGATCAAACAGGAGACAATAGCTCAAGAAGTAGATATCTCAAGCTCACGGAAACAGTATGATATTATTTTACCAGAACTTGGTCCATACACTCTGGATTTTACTTCAAGTGGCCGGTATATGGCTGTGGGTGGTCGTAAGGGCCATCTAGGAATAGTGGACATGATAAATCTGAGCCTAATTAGAGAGCTTCAGGTAAGGGAAACAGTGCGTGATGTGGTATTCTTGCACAATGAGCTCTTCTTTGCTGCTGCACAGAAAAAGTATTCATACATCTATAATCGAGAAGGCACTGAGCTTCACTGCCTTAAGGAACATGGTCCAGTGTTGAGGCTTCAGTTTCTGAAAAACCATTTTCTCTTGGCCACACTCAATAAGTTTGGGCAGCTTCGCTATCAGGACGTTACAATGGGTTCAATGGCAGGTAGTTTTAAAACTGGCTTAGGACGTACAGATGTGATGCAAGTAAACCCCTTCAATGGGGTTGTTTCTTTAGGTCACTCAGGTGGTACTGTTACCATGTGGAAGCCGACCAGTTCTGCTCCTCTTGTCAAGATGCTATGTCATCAAGGGCCTGTTTCAGCGCTGGCATTTCACTCAAATGGCCACTTGATGGCCACTGCAGGGAAAGATAAAAAAGTCAAGCTTTGGGACTTAAGGAAATTTGAGGTTCTTCAAACCTTACCTGGTCATGCAAATACTCTGGATTTTAGTCAAAAGGGCTTACTTGCTTGCGGTAATGGCTCATTGGTCCAGGTTCTGCGAGATGTTTCTGGTACACAGAATTATTCCAGGTACATGACTCATTCCATGGTGAAAGGTTACCAGGTAGGAAAATTAATATTTCGACCATATGAAGATGTTTTGGGTATAGGGCACTCCACGGGTTGGTCTAGTATTCTTATTCCAGGAGCTGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCGTTCGAAACTTCCAAACAGAGAAGAGAAAAGGAAATACGTGCTCTACTTGATAAGCTCCCACCCGAGACTATCATGTTGGATCCCAGCAAGATTGGTACGGTGAAACCAAAAAGAGAGAAGCCAACAAAGGAAGAGAAGGAGGCTGAGATTGAAGCTGCCGTTGAAGCTGCTAAGGGCATGAAACTGAAGAACAAGACAAAAGGAAGAAACAAGTCAGGTAAAAGGGTACAGAAAAAGCAAGACGCAGTTACTAGAGTGAAGAGGCCCTACTTGGAGCAGAAAATTCAAGAAGAGGAAAACTTGTCAAGAAAGAAGCAGAAAACTAGTGAGGGTGTTGAACTACCAAAATCTTTACAACGGTTTGCTCGTAAAAAACCATCATCGTGA 1608 0.4316 MGKNEENDALTKNKPSTEKDILSELELKMKKYLRGESANLEGLKDKKLKGQLAIKEQLYGKSAQAAAKAEKWLMPSEGGYLEAEGLEKTWRIKQETIAQEVDISSSRKQYDIILPELGPYTLDFTSSGRYMAVGGRKGHLGIVDMINLSLIRELQVRETVRDVVFLHNELFFAAAQKKYSYIYNREGTELHCLKEHGPVLRLQFLKNHFLLATLNKFGQLRYQDVTMGSMAGSFKTGLGRTDVMQVNPFNGVVSLGHSGGTVTMWKPTSSAPLVKMLCHQGPVSALAFHSNGHLMATAGKDKKVKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLVQVLRDVSGTQNYSRYMTHSMVKGYQVGKLIFRPYEDVLGIGHSTGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRALLDKLPPETIMLDPSKIGTVKPKREKPTKEEKEAEIEAAVEAAKGMKLKNKTKGRNKSGKRVQKKQDAVTRVKRPYLEQKIQEEENLSRKKQKTSEGVELPKSLQRFARKKPSS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02768 535 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Viun7g02768 535 SUPERFAMILY WD40 repeat-like 112 384 IPR036322 GO:0005515
Viun7g02768 535 Coils Coil 450 470 - -
Viun7g02768 535 FunFam U3 small nucleolar RNA-associated protein 7 108 390 - -
Viun7g02768 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Viun7g02768 535 MobiDBLite consensus disorder prediction 482 518 - -
Viun7g02768 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Viun7g02768 535 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Viun7g02768 535 PANTHER WD-REPEAT PROTEIN BING4 6 530 IPR040315 -
Viun7g02768 535 MobiDBLite consensus disorder prediction 439 469 - -
Viun7g02768 535 Gene3D - 119 385 IPR015943 GO:0005515
Viun7g02768 535 SMART WD40_4 269 308 IPR001680 GO:0005515
Viun7g02768 535 SMART WD40_4 311 345 IPR001680 GO:0005515
Viun7g02768 535 SMART WD40_4 105 144 IPR001680 GO:0005515
Viun7g02768 535 SMART WD40_4 147 184 IPR001680 GO:0005515
Viun7g02768 535 Pfam WD domain, G-beta repeat 278 308 IPR001680 GO:0005515
Viun7g02768 535 SMART BING4CT_2 355 435 IPR012952 -
Viun7g02768 535 MobiDBLite consensus disorder prediction 433 535 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02768 118 331 U-box Gene Family AT2G33340 26.106 5.42e-11 63.2