LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g02764	ATGGATGGAATAATTAGACAACATGTGAATGCATGGAAATTGTGGAATGTTCACGGCATATTCTGGAATCTACCAGAATTCATGAAGGCTGCTTCAGGTTCTGCACCAAGTGCAGACAAAAGTAATGTCAGCAAGGAGGAGGAAAAGTCTGAGACATATTCTCATAACATGACAGAAGCTATGGGTGCTGTTTTGACTTATAAGCACGAGTTAGGAATGAACTATAACTTCATCCGTCCAGACTTAATTGTGGGATCATGCCCACAGACTCCTGATGATGTTGAGAAGTTGCGTAGGATTGGAGTGAAAACAATATTTTGCTTACAACAAAATCCAGACCTTGAATATTTTGGAGTTGATATTAAGGCCATACAAGAATATGCCAAGGCACATGATGTTCAACACTTGCGAGCTGAGATAAGGGACTTTGATGCATTTGATCTACGAATGCGGCTTCCAGCTGTAGTTAGCAAATTATATAAGGCAATAAATTCCAATGGAGGTGTAACATATATTCATTGCACTGCTGGACTTGGAAGAGCTCCTGCCGTTGCAACGGCCTACATGTTTTGGGTTCTGGGTTATACATTCAAGGAGGCTCATACACTACTTCAGAGCAAAAGGGAGTGCTTTCCCAAACTAGATGCCATTAAAAGTGCGACGGCTGACATCCTTACAGGCCTTAGTAAGAAACCTGTCACTTTGTCATGGGAAGACAGCAATTGCTCTAGGGTGGAAATTTCAGGGCTTGATATTGGATGGGGGCAGAGAGTACCCCTAGATTATGATGACAAATCGGGTTTGTGGTATCTCGAGAGGGAACTACCTGAAGGACGCTATGAGTACAAGTACATTGTTGATGGGGTATGGACATGCAATAATGATGAGCTTGTAACCTCTCCAAACAAAGATGGCCATGTCAATAATTTCATTCAAGTCCTTGATAATAGCAGCAGTGATCGTGTTTCCCTTCGGCAGAGATTCAGTTCTGATGATCCTGATCTTACAGCGGAGGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGATGAGGATCTGTGA	1068	0.4242	MDGIIRQHVNAWKLWNVHGIFWNLPEFMKAASGSAPSADKSNVSKEEEKSETYSHNMTEAMGAVLTYKHELGMNYNFIRPDLIVGSCPQTPDDVEKLRRIGVKTIFCLQQNPDLEYFGVDIKAIQEYAKAHDVQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVATAYMFWVLGYTFKEAHTLLQSKRECFPKLDAIKSATADILTGLSKKPVTLSWEDSNCSRVEISGLDIGWGQRVPLDYDDKSGLWYLERELPEGRYEYKYIVDGVWTCNNDELVTSPNKDGHVNNFIQVLDNSSSDRVSLRQRFSSDDPDLTAEERLRIKEFLEACPDEDL	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g02764	355	SMART	dsp_5	74	223	IPR020422	GO:0006470\|GO:0008138
	Viun7g02764	355	CDD	E_set_AMPKbeta_like_N	232	313	-	-
	Viun7g02764	355	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	67	247	-	-
	Viun7g02764	355	PANTHER	DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN	28	353	-	-
	Viun7g02764	355	CDD	DSP_laforin-like	73	219	IPR045204	GO:0019203
	Viun7g02764	355	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	71	214	IPR029021	-
	Viun7g02764	355	Pfam	Glycogen recognition site of AMP-activated protein kinase	232	316	IPR032640	-
	Viun7g02764	355	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	150	208	IPR000387	GO:0016311\|GO:0016791
	Viun7g02764	355	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	74	230	IPR020422	GO:0006470\|GO:0008138
	Viun7g02764	355	MobiDBLite	consensus disorder prediction	33	53	-	-
	Viun7g02764	355	Gene3D	Immunoglobulins	228	318	IPR013783	-
	Viun7g02764	355	SUPERFAMILY	E set domains	231	314	IPR014756	-
	Viun7g02764	355	Pfam	Dual specificity phosphatase, catalytic domain	127	211	IPR000340	GO:0008138\|GO:0016311
	Viun7g02764	355	Gene3D	Protein tyrosine phosphatase superfamily	67	346	IPR029021	-
	Viun7g02764	355	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	228	318	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g02764	Viun-Chr7	30984274	30991286	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g02764	73	355	Protein tyrosine phosphatase (PTP) family	AT3G52180	67.606	5.36e-147	415

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g02764	-		-	vum:124845419	592.038