Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02714 ATGGAAGCACCAGAGGAACTCTCTCTGGGGGGGTCTAAAGATCACGCCAACATTGTCAAGGGGAAAAGAACCAAAAGGGTCAGACCTCAATCCCCTATCCCCTTCTCTGTCACCGCCAATTCCTCCACCGGAGAAGGAGAAAGAGATGATTTTTACAATGTTGATGACAACACCAACACCAACACCAACACCAGTAACATCACCAGCAACAACAACAACAAAAACCATGATATTAATAATAACAACCACAACATCATCAACAACAACAGCAACAACTCTCCCACCACTTCTTCTGCAGGATTACAAGACAGCACAGACGAAGAAGAGGACATGGCCAATTGCCTCATCCTTCTAGCACAAGGACAATCCCGGGAATCTCCGAAACATGTGGAGGAAGATGTTGGCATGAACTACGCCAAGTACAGCAGTAGGAAATTCTTGGAGGCGGCTACCTTGGGGTCTAGCAGGGCAGGGTACTATGTTTATGAATGCAAGACATGTAACAGAACTTTCCCTTCTTTTCAAGCACTTGGAGGGCACAGGGCCAGTCACAAGAAGCCCAAGGCAATCATGCCCATTGCCCAAGACAAGAAGCACCAACACCTTTTGTCATCAGATGAAGAAGAGTTTCAATTGAAGACCAACAACAATAATAAATCACCATTTTCCCTTCAACTCAGTTCAAAGGCCAATTTGTACAACAAATCCAAGGTGCACGAGTGCTCCATCTGCGGTGCTGAATTCACATCGGGGCAGGCACTGGGCGGCCACATGAGACGCCACCGCGCACCGGTGGGGATCCCCACCACACTCTCCTTCACCCCCTTGGCTCTGGAACCGGAAGAAGATCACCCCAGAAAGAAAAGGAATGTGTTGAACTTGGAATTGGATCTCAATCTTCCTGCCCCAGAAGATGATCCAAGAGAATCCAAGTTTTCCTTTGCATCCAAGCAACATCAACAACAGCAACATGGACAGAAACAACAGCAGCAGCAGCAACAACAACAACAACCACAAACAAGTCTTGTCTTAACTGCCCCAGCTTTGGTGGATTGTCACTACTGA 1065 0.4742 MEAPEELSLGGSKDHANIVKGKRTKRVRPQSPIPFSVTANSSTGEGERDDFYNVDDNTNTNTNTSNITSNNNNKNHDINNNNHNIINNNSNNSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKHVEEDVGMNYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAIMPIAQDKKHQHLLSSDEEEFQLKTNNNNKSPFSLQLSSKANLYNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGIPTTLSFTPLALEPEEDHPRKKRNVLNLELDLNLPAPEDDPRESKFSFASKQHQQQQHGQKQQQQQQQQQQPQTSLVLTAPALVDCHY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02714 354 MobiDBLite consensus disorder prediction 1 106 - -
Viun7g02714 354 MobiDBLite consensus disorder prediction 55 102 - -
Viun7g02714 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 261 IPR013087 -
Viun7g02714 354 PANTHER ZINC FINGER PROTEIN ZAT5 92 328 - -
Viun7g02714 354 SMART c2h2final6 239 261 IPR013087 -
Viun7g02714 354 SMART c2h2final6 162 184 IPR013087 -
Viun7g02714 354 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Viun7g02714 354 SUPERFAMILY beta-beta-alpha zinc fingers 161 261 IPR036236 -
Viun7g02714 354 MobiDBLite consensus disorder prediction 298 340 - -
Viun7g02714 354 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Viun7g02714 354 MobiDBLite consensus disorder prediction 31 47 - -
Viun7g02714 354 Gene3D Classic Zinc Finger 160 261 - -
Viun7g02714 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 189 IPR013087 -
Viun7g02714 354 Pfam C2H2-type zinc finger 238 264 - -
Viun7g02714 354 Pfam C2H2-type zinc finger 161 187 - -
Viun7g02714 354 MobiDBLite consensus disorder prediction 314 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02714 Viun-Chr7 30638382 30640495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02714 1 354 C2H2 Transcription Factor Family AT5G04390 43.557 4.07e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g02714 zf-C2H2_6 7.1e-13 CL0361