Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02677 ATGGCAGGGAACTTCAGATTCACAATGGATCAGAAGGACATTGTTAGATTCTTGACTACAACTATAGATAGTTTCATTCAAGATAGGTTAATCAATAAAGAGCAAAGAGCCCAGCACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGAAGGAAGTTGTGATAAGGACAGTGAGGTGGAATACTCTGATCAAGCAGTATTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACATATAACATGGAAACGAAGCTTGCTAGGCTAGATTATGCTGAGAAGATGCTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTACTACCTCTCAGCTTGGGCACATCTAAATCTATCCTATTTATGGAAGTTGAGGAACAGCATTCAAAATTGTCTTCACCATGCTCTTGAGATGTTCATTGTTGACCCTTTTTTTTCGCGGATTGATTTTGCTCCTGAACTCTGGAAGAACCTGTTTCTTCCACACATGAGCTCAATTGTGGGTTGGTATTCTGAGGAGAGGCATAGGCTAATGATGGAAGTGATACCAGACTCCAGTGATTTGTCCTTTACAGCTGATTTTGATAGGTTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCACATCAGTTAGACAAATTGCAAAAGCTGGAGCAGCTTTATGCAGAATCATTGGATGAAAACACACGGCTATACGCAAAATATTATAAAGATTGCATGAATTCTGATTCCACTTCAGGCAAGAAGGCAGCTCCTATGTTGCCTATTGCTGAGCCACCAAGAACTCCTTTGCATGAGTTGAGTCGGTCTGTTCCTGATTTTGTAAAATTTGGCCCTATTTTGCCCAAGAGTGCAGGGTTCTCTTTGACAACAAGATCTAAAGATGGTGTAAATGAAACAATCAGCACAGAGAATTCAACTTCCAGCCAAACAAAGGCGGAGAAATCATCCATATGGGCTGCTAAGGAAAGTATCATTGAGGAGAATGAGAATGAAGATGATTCAGATTCTGAACTTGATGATGGTTCAGTGGATTCAGATAGAAGAAACAATATTTTATCACCAGGAATGAAGATGGTGAGGGATGAGGATATTGAGCCAAAAGCGCCTCTATCAAACCATAAGAGTAAGATTCATTCTCCTGATATCTTCTCTCCCTTGGATTCCCCAAAAGCAGGTCCAAATAGTTCGTCAACAAATCCTGATACAAACAATAAGAGAGAACCCAAGTATCTTCGCTTATTATCTACTCGTTTAAGGGACTCAACTACTTCTGACTCTTTATCATCATCATCTCTGGAAATGAGCACTGATCATATGTTCAACTCTGACAAAGAAATAAGGGGCTTGAAGAATATTAATAGGAAAAACAGTAACCAAACACCAAGTATGAATCACGACAGTGGGAATAGTCTAGGACTAAATGACAGTTCCCATGGTGAAAGTGACGACGAAAATCAAAGCTTCACTACGTTGCCCAAGTTAGAGAAGCTGGCGATTGGATCAAAACCACCAAAAGATTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTGACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCAATTCAAGAATGGCTTAGAACAGGTAACACGACATGCCCCATCACGCGACAGCCTCTGTCTGCAAATATATTGCCCAAAACAAACTATGTTTTGAAGAGATTGATAACGTCATGGAAAGAACAGAATCCCGAACTGGCGCACGAACTCTCGAATTCTAACACTCCAAGGGGTTCTTCATGTTCTCCATCTGCAAAAGACTTTCAAATGCTCTCCGTTACACAAAGAGCAACTGATTCACCAGGACTAAAGAACAAAGAAAATTATACAAGACAAAGGAGCAACAGATTTATGCGAGTTTCTGTTGCAACATCTCCAACTAGTGTGCTATCTCAAGCTGCAGTTGAAACAATTTTGAATTCCTTGAAACCTTACGTTTCGAGTCTTTCTACGTCAGAAAACTTGCAAGAATGTGAAGAAGCTGTAATGGAAATAGCAAGATTATGGAAAGATTCAAAGACAGATCCTCATATTCATGGTTATTTATCAAAGCCAGCAATCATAAGTGGTTTGGTGGAAATACTTTCAGCTTCTATGAGTAGAGAGGTTTTGAGAACATCAATTTATATACTTTCTGAGCTGATATTCTTAGATGAAAGTGTTGGAGAAACACTAAACAGTGTTGATTCTGATTTTGATTGCTTGGCCGCTCTGCTTAAGAACGGTTTAGCTGAGGCTGCTCTTCTTATTTACCAACTAAGGCCAGTTTTTGCACAGCTTTTGGCGCATGAGCTTGTACCATCTCTTGTGCAAGTAATTCAGAACGAAAATGAGCCTTCAGAGGATTTTCAGCTAGTTATAGACCCTAAAGATGCTGCCATAGCAATACTTGAGCAAATTTTAATAGGAGGGGATGAATATAGCAGGTCCCTTAATGCTTTGAGTGTTGTTTCCGAAAATGGAATTCCATCCTTAGCAAAGTATCTAGAGAGGATGGAGGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAGGGTTGCAAGAGTTTGATAGCCAACAGAATTGAATTGTCTCCTGTTCTTGAATTATTTCACGCTGGAAATGATAGTGTGCGAGGCATCTGCGTGGAGTTTCTCTCAGAACTGGTTCAATTGAATAGAAGGACAGTCTGCAACCAGATATTACAGACAATCAAGGATGAAGGAGCATTTAGTACAATGCATACGTTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCTGTTGCTAGTCTTCTTCTTCAGATTGATCTTCTGGTTGAGCCGCGGAAAATGAGCATTTACAGGGAAGAAGCGATAGAGATACTTATAGAAGCACTTTGGCAAAAGGATTTCTCAAATACTCAAATGAAGGCTTTGGATGCTTTACTGTTTCTTATTGGACAAGTAACCACCTCTGGAAAGTCATACACTGAAGCTTGGTTGCTCAAGATTGCAGGATTTGATCAACCTTACAATGCTTTACTTAAGGCTGAGCAGTTGGGACAGTATGACAATGATTCAGTGGAAACAATGGAGGATGAAAAAAATGCTATGAACACTTGGCAGAAAAGGGTGGCTTTTGTACTTTGCAACCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCTTTAAAGATGGCAAAATCTTGCCTTGTTCTTGTGGCTTGGCTCACACACATGCTCTCTACTCTTCCTGATACGGGCATAAAGGATGTTGCTCGCAAATCCTTGCTTGATGAACTTATAAATATCCTGCAATCATCTAAAAACCTAGAGGAGATGATATTGGCTAGCCTAGCCTTGAAAACTTTCCTTAGTGATCCAATTACACAAGAAGCACTTAGAGCTTATGCTAAGAGAATCTACAGAACCATGAGGAAGCTGAAGAGATATTCAACAGTAGCAGTTGATATTATGAAGGCCTTACTAAACTTAAACTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAGGAAGTTGTTGAGTTAGATTTGAGTTCAAATGGAGAGGTCCTTTCTTTGCATTACATGAAGGGTCAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGAAAGAGAATACCAAGAGTGATTCAAGAAACTCGTGAGCACACAAAAGCTGTAACATCGCTATGTTCTTCAGATGATAGACTATACAGTGGTTCCTTAGACAAAACCATTCGGGTTTGGACAATGAAACCAGATGAGATTAAATGTATAGATGTTCATGACGTAAAAGAGCCGGTGTATGAGCTAACAGCCAATGCCACATTGGCATGTTATGTATCTCAAGGAAGTGGAGTTAAGGTTTTCAAGTGGTCAGAGTCTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGCCTGGCTGTTGCTGGGGACAAACTGTATTGTGGCTGCTCTGGTTACAGCATCCAGGAGGTTGACTTGTCCAAGAATACATCAAACTCATTCTTCTCTGGAACAAGAAAGTTGTTGGGAAAACAAACCATATACTCCCTTCGAGTTCATGATGATCTCCTCTTTGCTTGTGGTTCTTCAGTTGATGCAACTGCAGGAAAGATATTTTCACTTTCTTCCAAAACGGTGGTGGGAACACTCTCAACTGGACTTGACATCCATCGCGTAGCCATTAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAGGTTTGGCTCAAAGATAAGCTCACCCGGGTTGCTTCAATCAAAATGGCTGGTGGTCACACAAAGATCACATCTTTAGTATCAGATGCAGATGGTATGATGCTTTTTGTTGGTTCTTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4473 0.4029 MAGNFRFTMDQKDIVRFLTTTIDSFIQDRLINKEQRAQHKEQCAERLAAEEGSCDKDSEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNYYLSAWAHLNLSYLWKLRNSIQNCLHHALEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDRFFNESLVFSMRPHQLDKLQKLEQLYAESLDENTRLYAKYYKDCMNSDSTSGKKAAPMLPIAEPPRTPLHELSRSVPDFVKFGPILPKSAGFSLTTRSKDGVNETISTENSTSSQTKAEKSSIWAAKESIIEENENEDDSDSELDDGSVDSDRRNNILSPGMKMVRDEDIEPKAPLSNHKSKIHSPDIFSPLDSPKAGPNSSSTNPDTNNKREPKYLRLLSTRLRDSTTSDSLSSSSLEMSTDHMFNSDKEIRGLKNINRKNSNQTPSMNHDSGNSLGLNDSSHGESDDENQSFTTLPKLEKLAIGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANILPKTNYVLKRLITSWKEQNPELAHELSNSNTPRGSSCSPSAKDFQMLSVTQRATDSPGLKNKENYTRQRSNRFMRVSVATSPTSVLSQAAVETILNSLKPYVSSLSTSENLQECEEAVMEIARLWKDSKTDPHIHGYLSKPAIISGLVEILSASMSREVLRTSIYILSELIFLDESVGETLNSVDSDFDCLAALLKNGLAEAALLIYQLRPVFAQLLAHELVPSLVQVIQNENEPSEDFQLVIDPKDAAIAILEQILIGGDEYSRSLNALSVVSENGIPSLAKYLERMEGRRSVVSILLCCMQAEKGCKSLIANRIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTVCNQILQTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQIDLLVEPRKMSIYREEAIEILIEALWQKDFSNTQMKALDALLFLIGQVTTSGKSYTEAWLLKIAGFDQPYNALLKAEQLGQYDNDSVETMEDEKNAMNTWQKRVAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLVAWLTHMLSTLPDTGIKDVARKSLLDELINILQSSKNLEEMILASLALKTFLSDPITQEALRAYAKRIYRTMRKLKRYSTVAVDIMKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYMKGQVLSGHSDGTIKVWDARKRIPRVIQETREHTKAVTSLCSSDDRLYSGSLDKTIRVWTMKPDEIKCIDVHDVKEPVYELTANATLACYVSQGSGVKVFKWSESPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKNTSNSFFSGTRKLLGKQTIYSLRVHDDLLFACGSSVDATAGKIFSLSSKTVVGTLSTGLDIHRVAINSDFIFAGTKFGTIEVWLKDKLTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02677 1490 MobiDBLite consensus disorder prediction 464 488 - -
Viun7g02677 1490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1249 1281 - -
Viun7g02677 1490 Pfam U-box domain 516 586 IPR003613 GO:0004842|GO:0016567
Viun7g02677 1490 MobiDBLite consensus disorder prediction 428 449 - -
Viun7g02677 1490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 597 IPR013083 -
Viun7g02677 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1224 1237 IPR001680 GO:0005515
Viun7g02677 1490 Gene3D - 646 1019 IPR011989 -
Viun7g02677 1490 MobiDBLite consensus disorder prediction 370 386 - -
Viun7g02677 1490 CDD RING-Ubox_PUB 516 568 IPR045210 -
Viun7g02677 1490 MobiDBLite consensus disorder prediction 401 416 - -
Viun7g02677 1490 SUPERFAMILY RING/U-box 514 587 - -
Viun7g02677 1490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1456 1490 - -
Viun7g02677 1490 SUPERFAMILY WD40 repeat-like 1220 1489 IPR036322 GO:0005515
Viun7g02677 1490 Gene3D - 1188 1490 IPR015943 GO:0005515
Viun7g02677 1490 Pfam WD domain, G-beta repeat 1458 1487 IPR001680 GO:0005515
Viun7g02677 1490 Pfam WD domain, G-beta repeat 1248 1278 IPR001680 GO:0005515
Viun7g02677 1490 Pfam WD domain, G-beta repeat 1219 1237 IPR001680 GO:0005515
Viun7g02677 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1249 1281 IPR001680 GO:0005515
Viun7g02677 1490 MobiDBLite consensus disorder prediction 337 499 - -
Viun7g02677 1490 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842|GO:0016567
Viun7g02677 1490 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1489 - -
Viun7g02677 1490 SMART WD40_4 1242 1279 IPR001680 GO:0005515
Viun7g02677 1490 SMART WD40_4 1447 1488 IPR001680 GO:0005515
Viun7g02677 1490 SMART WD40_4 1199 1237 IPR001680 GO:0005515
Viun7g02677 1490 MobiDBLite consensus disorder prediction 254 276 - -
Viun7g02677 1490 MobiDBLite consensus disorder prediction 309 328 - -
Viun7g02677 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1456 1490 IPR001680 GO:0005515
Viun7g02677 1490 SMART Ubox_2 518 582 IPR003613 GO:0004842|GO:0016567
Viun7g02677 1490 MobiDBLite consensus disorder prediction 338 352 - -
Viun7g02677 1490 SUPERFAMILY ARM repeat 665 1012 IPR016024 -
Viun7g02677 1490 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02677 Viun-Chr7 30379257 30386968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02677 516 663 U-box Gene Family AT5G42340 34.524 1.70e-16 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02677 - - gmx:100776142 2567.73