LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g02648	ATGAACAATGAGGATCCTGGCATTTCAGGCAAACACTATATAGATGCGGTGAATTTTGGTCTAGGCAACCAAGTCTCTTGTGCTGAGGATGGACATGACATATGTTACCAGACGGGTGAAGAGTTTTCTGCGGAGTTCTTACGTGATCGAGTTGCCTTAAGAAGAATTCCTGTCACAACTGACACAGACATGCGTCTGCCAAACAGGTTGGATGTTAATATTAATGATAATAATTGTCAGTTGGTTTATGAGGATCTAAAGCATGGTTTCAGGCTAAGGAGAGCAGATTCAGATGGTAACTCGGATTTGTCAGAGTTTGCATTTGCCAGAGGATGTGTTGGTGAAGTTGACAACAGGACCTATCCTAATAATTTGAACAGATACCAGTTTGAACAAGGTGGTATCAGACAAGTATCAGGTACATTTTCTAGACAACTATCAGGGAACTTTTCGGAGGGAAGTGGTGGAGATCAAGTTAATTCAGGACCAAATACTTCATCTATGTACGTTGACTCACCTCAATCATACCATCCTTATGCATCAGTATTCACAGAAGGTTCTTTCTATAAGAAGATAAAGTTTCTTTGTAGCTTTGGAGGTAGAATACTACCAAGACCAAATGATGGGAAGCTCAGATATGTGGGTGGAGAGACACGGATAATATCAATTAGGAAGAGCATGGCATGGGAGGAACTTATGAGGAAGACTTCTGCTATCTGCAGTCAAACTCACACTATCAAGTACCAGCTTCCTGGAGAGGATCTTGATGCTCTTATATCTGTTTGTTCCAACGAGGATCTTCATCATATGATCGAGGAGTATGAAGAGCTTGAAAGAGCTGGAGCCTCGCAACGGCTGAGGATTTTTCTCATTCCTTTAAATGAATGTGAGAGTTTAAGTTCCAATGAAGCAATAGTCAATCAGCAAAGTGATGTGGATTATCATTATGTTGTTGCTGTTAACAATATGCTGGATCCAAGTCCACAACAGATTTCCAGTGCGCGAAGTTTAGCAAGCCATACAAGCCAGTTTGGAAATACCATTGATTACAACACTCCACATTTTCACAGAGACTCATCCACATCTGCATTTGCTTCAGAGATGAAAGACTGCACCCCAACCTCTCCAAATTTTGCAGGCCTACTCTCAAAACCCAGTCCTCAATATTTTACAGCCCTAGCTGGCCAATCATTCAATCAAATGCCTCCTTTACCTCCTGCTTGTGATCACCAAAATTCTAATGGACAGCTATTTATGGATAAACCATATAATGCTATGAATGAAACCATTACTCCCTTTGTTACGGAAAAAGTTCCACATGACAATACTCTGTATGTAGACAATGCCAATTATGTTGATCCAGTTGCATACTATAACAATCTTGCTCAAGGGCCTAGGCGCGTGAATTACCATCCTAATAATCAATATATAAGGGAGTCTGACCAGATCAGGAGGCCTCGTGAGAATCTTCATCTTCACAGACATAACAGAAGCAACGACTTTGTCACTTCTGCAATATGTAATCTAAATAATACGAGTTATGAGAGACCTTTAATTACCGGTGATGGTTCATATCATTTTAACAATATTGTCTCTCATCCTCACGAGTCTCCAAGTTTATTGTCAGAATCTGATCCTAGAGAGGGATCTCGGTACACAATGTTGCATGCACACTCTGACACAACACTTAACGAGAATGATGAGAACTATAAGGTCCACTTGCAATTTCCCCGCAATGTAGAGAGAGACAATTTTCTATCACGAACAAATTCAAATCATTTAGAAGATTTTTCATTACAGCCTGGAGAGATAGTTGATAGGAAAGAGCACCTGGCTAAGTATCAAAATTTGCCCGTTTTCGGAATTACTAATAGCTATAAGAAAGTATTAGAAATTGGTAAAGAGAGCTTGCAACATGCAGAAAAGAACAATGATTTCTTTGATGAAACGAACAATGCCATAGATTTTAAACATTTACAGCACATCTACACTCCACATGTTGTTTGCTCATCTTCTCCAGATTTACAGAGAAGTGAATGCAATGCATTTACCGAGTCATTTGTCTCTCTCGAATCCCCACTAAACCTGAGGGGGCAAACAAGTGTGGTACAATTAGACAGAACCACTTCTGAGTTTTCCATGAGGAGCCGAAATTCATCAAAAATACATCACCAATATGCTATGTCGGCGGCAGATGACAGTCAACCACTTTTCCCTGGCCCTTTTAAGTCCCAAAATGGCAAAGAATCTTCCTTACCTATCTCATATATGGACATGATTTCTTCCCTGAGAGAGGCTGTTATACCTGTCGGAGATCCTGCGTACTACCTGCACCAGAAGGAAGAAAACACAATCGTTGAGAATCGGACTTCTGAATATATTGATGAATTCTGTGTCAACAGGCCAGTGTCTGATTCCAAGGGACCTACGGATTATATTTCTTCGGGTATCCAGTCATGCTTAAAAGTTGTTTCAAATGTAGATGAAAAGGTTGAAGTTGAACCTACATCTCCTAAAAAGGAAGGGATAGAACGTGATAGTCCAGAATCTGAAAGTAAGCATGCAAGGCCTGAAAGTGGAAACTTGAACAAGTCTACTGGTGATAGAGCAACTGCTGAAACAGAGTCTGAAATTTATGGATTACAGAATATTGAGAATGATGATCTTGAAGAACTGCAAGAGTTGGGATCTGGAACCTTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGAATAAAAAGCAGTTGTTTCTCGGGTAGATTGTCAGAGCAAGAGCGGTTGATTAAGGACTTCTGGAGGGAGGCACAGATCCTGTCAACTCTTCACCATCCCAATGTGGTGGCGTTTTATGGGGTAGTTCCAAATGGCCCTGGTGGAACACTGGCGACAGTAACGGAATACATGGTGCATGGATCACTCAAGAATGTTCTCATGAAGAGGGAAAAAGTGCTTGACCGTCGTAAAAGGGTCCTGATAGCAATGGATGCAGCCTTTGGGATGGAATATTTGCATTTGAAAAATATTGTGCATTTTGATTTAAAGTGTGATAATTTACTTGTCAATCTGGGCGATCCTGAACGACCTGTATGCAAGGTTGGAGATTTTGGCCTATCCAGAATAAAACGTAATACACTTGTTTCAGGTGGTGTCCGAGGAACCCTTCCATGGATGGCACCTGAATTACTGGATGGTAACAGTTGTAGGGTATCTGAGAAGGTTGATATTTTCTCATTTGGCATTGTAATGTGGGAAATCTTGACTGGGGAAGAACCATATGCTAACATGCACTGTGGCGCTATCATTGGCCTCCTATTCCAAAACGATGTGATTCTGAGTGGAAAAAGCTGA	3366	0.4085	MNNEDPGISGKHYIDAVNFGLGNQVSCAEDGHDICYQTGEEFSAEFLRDRVALRRIPVTTDTDMRLPNRLDVNINDNNCQLVYEDLKHGFRLRRADSDGNSDLSEFAFARGCVGEVDNRTYPNNLNRYQFEQGGIRQVSGTFSRQLSGNFSEGSGGDQVNSGPNTSSMYVDSPQSYHPYASVFTEGSFYKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKSMAWEELMRKTSAICSQTHTIKYQLPGEDLDALISVCSNEDLHHMIEEYEELERAGASQRLRIFLIPLNECESLSSNEAIVNQQSDVDYHYVVAVNNMLDPSPQQISSARSLASHTSQFGNTIDYNTPHFHRDSSTSAFASEMKDCTPTSPNFAGLLSKPSPQYFTALAGQSFNQMPPLPPACDHQNSNGQLFMDKPYNAMNETITPFVTEKVPHDNTLYVDNANYVDPVAYYNNLAQGPRRVNYHPNNQYIRESDQIRRPRENLHLHRHNRSNDFVTSAICNLNNTSYERPLITGDGSYHFNNIVSHPHESPSLLSESDPREGSRYTMLHAHSDTTLNENDENYKVHLQFPRNVERDNFLSRTNSNHLEDFSLQPGEIVDRKEHLAKYQNLPVFGITNSYKKVLEIGKESLQHAEKNNDFFDETNNAIDFKHLQHIYTPHVVCSSSPDLQRSECNAFTESFVSLESPLNLRGQTSVVQLDRTTSEFSMRSRNSSKIHHQYAMSAADDSQPLFPGPFKSQNGKESSLPISYMDMISSLREAVIPVGDPAYYLHQKEENTIVENRTSEYIDEFCVNRPVSDSKGPTDYISSGIQSCLKVVSNVDEKVEVEPTSPKKEGIERDSPESESKHARPESGNLNKSTGDRATAETESEIYGLQNIENDDLEELQELGSGTFGTVYHGKWRGTDVAIKRIKSSCFSGRLSEQERLIKDFWREAQILSTLHHPNVVAFYGVVPNGPGGTLATVTEYMVHGSLKNVLMKREKVLDRRKRVLIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGIVMWEILTGEEPYANMHCGAIIGLLFQNDVILSGKS	1121

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g02648	1121	CDD	STKc_MAP3K-like	895	1107	-	-
	Viun7g02648	1121	Pfam	PB1 domain	207	290	IPR000270	GO:0005515
	Viun7g02648	1121	Gene3D	Transferase(Phosphotransferase) domain 1	870	1112	-	-
	Viun7g02648	1121	SMART	PB1_new	206	293	IPR000270	GO:0005515
	Viun7g02648	1121	Pfam	Protein tyrosine and serine/threonine kinase	891	1107	IPR001245	GO:0004672\|GO:0006468
	Viun7g02648	1121	SUPERFAMILY	Protein kinase-like (PK-like)	879	1114	IPR011009	-
	Viun7g02648	1121	Gene3D	-	210	292	-	-
	Viun7g02648	1121	MobiDBLite	consensus disorder prediction	828	873	-	-
	Viun7g02648	1121	ProSiteProfiles	Protein kinase domain profile.	889	1121	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g02648	1121	MobiDBLite	consensus disorder prediction	828	858	-	-
	Viun7g02648	1121	SUPERFAMILY	CAD & PB1 domains	207	300	-	-
	Viun7g02648	1121	SMART	serkin_6	889	1117	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g02648	1121	CDD	PB1_UP2	195	291	-	-
	Viun7g02648	1121	PANTHER	SERINE-THREONINE PROTEIN KINASE	236	1107	-	-
	Viun7g02648	1121	ProSitePatterns	Protein kinases ATP-binding region signature.	895	916	IPR017441	GO:0005524
	Viun7g02648	1121	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	882	976	-	-
	Viun7g02648	1121	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	1014	1026	IPR008271	GO:0004672\|GO:0006468
	Viun7g02648	1121	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	211	293	-	-
	Viun7g02648	1121	MobiDBLite	consensus disorder prediction	146	169	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g02648	Viun-Chr7	30166714	30174153	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g02648	37	323	MAP Kinase Kinase Kinase	AT1G16270	41.237	1.14e-42	167

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-6	Viun7g02648		PK_Tyr_Ser-Thr	7.9e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g02648	-		-	gmx:100810711	1702.18