Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02591 ATGGATTCGGATCAGGGAAAATTATTCATCGGTGGGATATCGTGGGACACTACGGAGGACAAGCTCAAGGAGCATTTCGGCAACTACGGCGACGTTTTGAGCACTTCTGTTATGCGAGAGAAGAACACTGGCAAGCCCAGGGGCTTTGGTTTCGTCGTCTTCGCGGATCCCACCATTCTCGATAGGGTTCTCGAGGATAAACATGTCATAGATGGCAGAACGGTTGATGCCAAAAAGGCTTTCTCAAGAGAGGATCAACAAATTTCTGTCACCTCGAGAGGTGGAAATTCCAATTCTGGCATGAATTCTGGTAATGGAGGAAACATCAGAACTAAAAAGATATTTGTTGGAGGGCTGCCTCCTACCCTGACCGAGGAAAAATTTCGTCAGTACTTTGAGTCTTATGGACATGTAACCGATGTAGTAGTCATGTATGACCAGAATACTGGACGGCCACGAGGATTTGGTTTTATTTCATTTGATACTGAGGAGGCCGTTGATAGGGTATTGCATAAATCATTTCATGATTTAATTGGTAAACAAGTTGAGGTAAAGCGTGCACTTCCCAAAGATGCCAATCCTGGTGCAAGTGGCCGTATGATGGGTGGTGCTGGAGGTGGTGGTTCTGGAATTGGTGGGTATCAAGGGTATGGGGCATCTGGAGGTAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCTCAAAGTGCTGCAGGTGGATTCCCTCCTTATGGTTCTTCTGCCTATAGTGCTCCTGGGTATGGATATGGTCCGGCTAATAATGGTATTGGGTATGGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGGTATGGGGGACCTGCTGGTGCAACATATGGGAATCCTAATGTTCCTAATGCTGCTTATGCTGGTGGTCCTCCAGGGGGCCCAAGGAGTTCATGGCCTGCTCAGGCACCCTCTGGTTATGGATCCATGGGCTATGGGAATACTGCTCCTTGGGGTGCTCCAAGTGGTGGTGCTGGCTCTGGTGGCAGTGGTCCTGGTTCAGCAGCTGCAGGTCAGTCCCCCGGTGGAGCTGCTGGATATGGGAACCAAGGTTATGGATATGGTGGGTATGGTGGATATGGTGGAAGTGATAGTTCTTATGCGAATTCAAGTGCATATGGCACTGTTGGTGGACGAACAGGGAGTGCTCCAAACAATAGTGCTAGTGGTCCTGGTGGGGGTGAACTAACAAGTAGTGGTGGCAGTGGTAGCTATATGAGTGGTGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCAGAACAAACTCATGCATCTGGAAATTATGGAACACCTCAGGGAAATGGTGGGCAGGTCGGCTACGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAACAGTAA 1431 0.4878 MDSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPTILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLIGKQVEVKRALPKDANPGASGRMMGGAGGGGSGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPANNGIGYGAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTAPWGAPSGGAGSGGSGPGSAAAGQSPGGAAGYGNQGYGYGGYGGYGGSDSSYANSSAYGTVGGRTGSAPNNSASGPGGGELTSSGGSGSYMSGGYGDANGNSGYGNAAWRSEQTHASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02591 476 CDD RRM2_Hrp1p 113 190 - -
Viun7g02591 476 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Viun7g02591 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Viun7g02591 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 170 IPR000504 GO:0003723
Viun7g02591 476 MobiDBLite consensus disorder prediction 382 425 - -
Viun7g02591 476 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Viun7g02591 476 SMART rrm1_1 7 78 IPR000504 GO:0003723
Viun7g02591 476 SMART rrm1_1 113 185 IPR000504 GO:0003723
Viun7g02591 476 Gene3D - 4 88 IPR012677 -
Viun7g02591 476 MobiDBLite consensus disorder prediction 382 476 - -
Viun7g02591 476 MobiDBLite consensus disorder prediction 433 455 - -
Viun7g02591 476 FunFam heterogeneous nuclear ribonucleoprotein 1 107 230 - -
Viun7g02591 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Viun7g02591 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Viun7g02591 476 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Viun7g02591 476 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 476 - -
Viun7g02591 476 Gene3D - 108 231 IPR012677 -
Viun7g02591 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Viun7g02591 476 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02591 Viun-Chr7 29750659 29753602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02591 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.020 7.70e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02591 K14411 - gmx:100786882 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02591 7 29750659 29753602 Viun7g02591 7 29750659 29753602 ECH