Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02561 ATGGATCTTGCAAGCAGAAGATACTTGATTTATGTCTCACAACATGTTTCACAATCAGAACCACTTTCTCCGGTCACAAGTCCAGGGGGTTCATTCTTTCATCCTCACCAGCACTCTTCTAGCACCAGTTTTCCCATCATTGCGATTGCCATAATAGGAATAATGGCCACGGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAACTGGCACAGAATCGATATTCTAAGACGTTTCTCTCCGTCTAGAAGGCGTGAAGATCCATCACCAATGTACTCACCAGGCACAGAAGCGCGTGGACTAGATGAGGCAATGATCCGGTTAATCCCTGTGATTCAATACAAGACACGAGGGGACGATAGAGAATCTGGGGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGAGGAGAAGCTCAGGATTATACCAAATTGCAGTCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTGTGCAGAACAAGCATTTCCTTGACAAGCAGATTCCACGTGGAGCAGCTTCTTGCCCTAAGATCTTCTTCCCCTCCGGATCAAACTCCACCCAGGGAAAACCTCATTGGAAGAGATGAAGATTTTGTTGTAATTGAATTGGGCAATATCCATGACAGAAGCCAGAATTTGCAAGAGAGAGGAAATGGTTTGGAGTTACCATCACCAACATCTGTTATGCGTTCTTGTACACCAAGGAAATTGGAACAAGGAAATGTGCAGAAGAAAGCAATGAAACTGCATAAGGTGACAAGCATGGGAGATGAGTGTATTGATATCAGAGCAAAAGATAAGCAGTTTTCAGTGCAACCAATCAGAAGGTCTTTCTCCATGGATTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGCTGCAGAACAGGCAAGTGAATGAAGTCAGCACCACTGAAGGGTGCAGTGGTGGTGGTGGTAGCAATAGAGTGAAGAGATCATTCTTTTCCTTCGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTGTTTCTTTGGAACCCTGA 1080 0.4435 MDLASRRYLIYVSQHVSQSEPLSPVTSPGGSFFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRREDPSPMYSPGTEARGLDEAMIRLIPVIQYKTRGDDRESGECAVCLNEFQEEEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFHVEQLLALRSSSPPDQTPPRENLIGRDEDFVVIELGNIHDRSQNLQERGNGLELPSPTSVMRSCTPRKLEQGNVQKKAMKLHKVTSMGDECIDIRAKDKQFSVQPIRRSFSMDSSGDRQFYLAVQEALRLQNRQVNEVSTTEGCSGGGGSNRVKRSFFSFGHGSRSRSSVQPVSLEP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02561 359 CDD RING-H2_EL5-like 130 173 - -
Viun7g02561 359 FunFam E3 ubiquitin-protein ligase ATL6 96 179 - -
Viun7g02561 359 MobiDBLite consensus disorder prediction 343 359 - -
Viun7g02561 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 181 IPR013083 -
Viun7g02561 359 SMART ring_2 131 172 IPR001841 -
Viun7g02561 359 MobiDBLite consensus disorder prediction 337 359 - -
Viun7g02561 359 Pfam Ring finger domain 130 173 IPR001841 -
Viun7g02561 359 SUPERFAMILY RING/U-box 124 179 - -
Viun7g02561 359 PANTHER RING-H2 FINGER PROTEIN ATL16 33 355 IPR044600 GO:0016567|GO:0016740
Viun7g02561 359 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02561 Viun-Chr7 29517891 29519754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02561 35 359 C3H Transcription Factor Family AT1G04360 53.933 1.67e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02561 - - gmx:100775286 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02561 7 29517891 29519754 Viun7g02561 7 29517891 29519754 ECH