Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02508 ATGTTGAATTTTGATCAGATCCTTTGGTTGACTTGGTTATGTCAGAAATTAGGTAACCGAGTGGAATGTTTCAGTATGAGAGCTAAGAGTTTGATAAGTAAAAAGCAGATAAGCCTAAGATTGAGAAAAATGATTAAGTGTATATGCTCTGGGGAGCAGTTAAAGGTGGATGAATTAGGTTACTCATCGGAGTCCTTAGCAACCAGAGATTATTCAGCAAGTGGTGGCTTTTCATCTCGTCCTGGTGAAAACGACCCAAAGCTTGACAATACCAACATTGAAGAAGCAGAGTCTTCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCTTTGCTTGGAAGACTTGAGTATCAGAAAGGCAATGTGGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTGCTACTGTTGTTCCCAAGATTAAGGTTTCTATATCCAGAAGATGTGAACCTAATAGACGAAGTTCGCAAAGTGATGCTCAGCCTCCTATGTCAATGCATGCTGTTACTTTAATTCTTGAAGCTGTATTTCTCAAGGCCAAATCGTTGCAGGCTCTAGGAAGGTTTCAAGATGCTGCTCAGTCATGCAAGACGATTTTAGACACTGTTGAATCAGCTTTACCGGAAGGCTGGCCTGAAAACTTAGTTTCGGATTGTAAACTGCAAGAGACTGTGGCAAATGCTGTGGAACTGCTTCCAGAGTTATGGAAGCTTGCAGGCTCTCCTCAAGATGTGATCTCATCGTTTAGGAGGGCTCTGCTTTATCATTGGAATCTTGGCATTAAAGCCACTGCAAGAATACAAAAGGAATTTGCTTTTTTTCTTCTGTATAGTGGTTGTGAAGCTAGTCCTCCTGCTCTTCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAGCAACTTAGAAGAGGCTGTTCTTCTGCTTCTGATTTTGCTGAGAAAATCTATTCTTGGATACATTGAATGGGACCCTTCATTAATTGATCACCTTTCTTTTGCTCTAAGTGTTTCTGGGGAATTCATGACCCTAGCTCAGCAGGTTGAGGAATTGCTTCCTGAAAACGTGGACAGAAAAGAAAGATTCTATACTCTAGCTCTTTGTTACTGTGGAGAAGGTGAACATACGACTGCTTTGGATCTTCTAAGGAACTCTCTGAATCACAGAGAGAACTCAGACTGCATAAAGGAGTTACTTTTAGCTTCAAAAATTTGTGCAGACAAGAAGATTTACACTGAAGAAGGAATCGGATATTCTTCCAAAGCCATTTCTCAGCTGAATGGAAAGTGCATGCAGATGGTAGCTATTGCAAATTGCTTGCTGGGTGTTCTACTGTCGTCAAAATCAAAGTCAGTTGCTTCTGAATCAGAGAAGGTTTTTTTGCAGTCTGAAGCACTCAGCGCTCTAAAGGATTCTGAGAGAACGATGAGGGAAAGCGATCCTTACATTGTCCTTCATCTTTGTCTAGAATATGCTGAACAGAGGAAGTTGAGCATCGCTATTGAACATGCAAAGAAACTGATTAAGCTTGAGGGTGGATCTAGTGTCAGTGCATATATTCTTCTAGCACGGATTTTATCTGCTCAACGAAAGTTTGAAGATGCAGAGCTTGTTATCGATGCTGCTCTAGATCAAAGTGGGAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTACGTATTGCACAGGGAAAATTAAAGAATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAGGTCCAAAATAAAAGTTTAGGCACCGCAAGTAAGAGTAAGGTAAACCGCGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAAAGTGTACACGGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTAGCAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAGGGTTTAGTTTTTGAAGCCAGAGGTGTTCATCAAGAGGCTCTGAAATCATTTAGGAAAGCATTAGATATTGAACCCAACCATGTGCCAAGTTTGATATCTACAGCGTGTGTACTCAGAAAACTTGGTGGTCAATCATCTTCAATAGTTAGAAGCCTTCTCACTGATGCGTTGCGCCTTGACAGAACAAACCCATCTGCTTGGTACAATCTTGGACTGTTCTACAGAGATGATTTGGGGACATCGGCAATGGAAGCTGTTGAATGCTTTGAAGCTGCAGCTTTTCTTGAAGAATCTTCTCCCATCGAACCCTTTAGATAG 2259 0.4112 MLNFDQILWLTWLCQKLGNRVECFSMRAKSLISKKQISLRLRKMIKCICSGEQLKVDELGYSSESLATRDYSASGGFSSRPGENDPKLDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNVEAALHVFEGIDIATVVPKIKVSISRRCEPNRRSSQSDAQPPMSMHAVTLILEAVFLKAKSLQALGRFQDAAQSCKTILDTVESALPEGWPENLVSDCKLQETVANAVELLPELWKLAGSPQDVISSFRRALLYHWNLGIKATARIQKEFAFFLLYSGCEASPPALRSQLDGSFVPRSNLEEAVLLLLILLRKSILGYIEWDPSLIDHLSFALSVSGEFMTLAQQVEELLPENVDRKERFYTLALCYCGEGEHTTALDLLRNSLNHRENSDCIKELLLASKICADKKIYTEEGIGYSSKAISQLNGKCMQMVAIANCLLGVLLSSKSKSVASESEKVFLQSEALSALKDSERTMRESDPYIVLHLCLEYAEQRKLSIAIEHAKKLIKLEGGSSVSAYILLARILSAQRKFEDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTASKSKVNRDRRLEMEIWHDLAKVYTALSQWQDAEVCLAKSEAINPYSASRWHTKGLVFEARGVHQEALKSFRKALDIEPNHVPSLISTACVLRKLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLFYRDDLGTSAMEAVECFEAAAFLEESSPIEPFR 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02508 752 ProSiteProfiles TPR repeat profile. 641 674 IPR019734 GO:0005515
Viun7g02508 752 SUPERFAMILY TPR-like 555 722 IPR011990 GO:0005515
Viun7g02508 752 Pfam Tetratricopeptide repeat 642 674 IPR019734 GO:0005515
Viun7g02508 752 Gene3D Tetratricopeptide repeat domain 87 395 IPR011990 GO:0005515
Viun7g02508 752 SMART tpr_5 361 394 IPR019734 GO:0005515
Viun7g02508 752 SMART tpr_5 641 674 IPR019734 GO:0005515
Viun7g02508 752 SMART tpr_5 518 551 IPR019734 GO:0005515
Viun7g02508 752 SMART tpr_5 607 640 IPR019734 GO:0005515
Viun7g02508 752 SMART tpr_5 176 209 IPR019734 GO:0005515
Viun7g02508 752 Gene3D Tetratricopeptide repeat domain 589 749 IPR011990 GO:0005515
Viun7g02508 752 Gene3D Tetratricopeptide repeat domain 437 588 IPR011990 GO:0005515
Viun7g02508 752 SUPERFAMILY TPR-like 351 577 IPR011990 GO:0005515
Viun7g02508 752 PANTHER PROTEIN NPG1 45 752 IPR043376 -
Viun7g02508 752 Pfam Tetratricopeptide repeat 492 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02508 Viun-Chr7 28966287 28969858 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02508 41 752 Calmodulin-binding Proteins AT4G28600 52.812 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02508 K21843 - gmx:100789469 1261.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02508 7 28966287 28969858 Viun7g02508 7 28966287 28969858 ECH