Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02506 ATGATGGAAAAAACACTTTTTTCCTTCCTCTTTCTACCTCTTTTACGTTCTTTCCTATCATTTCTTCTTCTCTCTATGATTCCGATAAGGCCTTTCCTTACATTCGACTTTAGCAAGTTGGGTAACCGAGTGGAATGTTTCAGTATGAGAGCTAAGAGTTTGATAAGTAAAAAGCAGATAAGCCTAAGATTGAGAAAAATGATTAAGTGTATATGCTCTGGGGAGCAGTTAAAGGTGGATGAATTAGGTTACTCATCGGAGTCCTTAGCAACCAGAGATTATTCAGCAAGTGGTGGCTTTTCATCTCGTCCTGGTGAAAACGACCCAAAGCTTGACAATACCAACATTGAAGAAGCAGAGTCTTCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCTTTGCTTGGAAGACTTGAGTATCAGAAAGGCAATGTGGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTGCTACTGTTGTTCCCAAGATTAAGGTTTCTATATCCAGAAGATGTGAACCTAATAGACGAAGTTCGCAAAGTGATGCTCAGCCTCCTATGTCAATGCATGCTGTTACTTTAATTCTTGAAGCTGTATTTCTCAAGGCCAAATCGTTGCAGGCTCTAGGAAGGTTTCAAGATGCTGCTCAGTCATGCAAGACGATTTTAGACACTGTTGAATCAGCTTTACCGGAAGGCTGGCCTGAAAACTTAGTTTCGGATTGTAAACTGCAAGAGACTGTGGCAAATGCTGTGGAACTGCTTCCAGAGTTATGGAAGCTTGCAGGCTCTCCTCAAGATGTGATCTCATCGTTTAGGAGGGCTCTGCTTTATCATTGGAATCTTGGCATTAAAGCCACTGCAAGAATACAAAAGGAATTTGCTTTTTTTCTTCTGTATAGTGGTTGTGAAGCTAGTCCTCCTGCTCTTCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAGCAACTTAGAAGAGGCTGTTCTTCTGCTTCTGATTTTGCTGAGAAAATCTATTCTTGGATACATTGAATGGGACCCTTCATTAATTGATCACCTTTCTTTTGCTCTAAGTGTTTCTGGGGAATTCATGACCCTAGCTCAGCAGGTTGAGGAATTGCTTCCTGAAAACGTGGACAGAAAAGAAAGATTCTATACTCTAGCTCTTTGTTACTGTGGAGAAGGTGAACATACGACTGCTTTGGATCTTCTAAGGAACTCTCTGAATCACAGAGAGAACTCAGACTGCATAAAGGAGTTACTTTTAGCTTCAAAAATTTGTGCAGACAAGAAGATTTACACTGAAGAAGGAATCGGATATTCTTCCAAAGCCATTTCTCAGCTGAATGGAAAGTGCATGCAGATGGTAGCTATTGCAAATTGCTTGCTGGGTGTTCTACTGTCGTCAAAATCAAAGTCAGTTGCTTCTGAATCAGAGAAGGTTTTTTTGCAGTCTGAAGCACTCAGCGCTCTAAAGGATTCTGAGAGAACGATGAGGGAAAGCGATCCTTACATTGTCCTTCATCTTTGTCTAGAATATGCTGAACAGAGGAAGTTGAGCATCGCTATTGAACATGCAAAGAAACTGATTAAGCTTGAGGGTGGATCTAGTGTCAGTGCATATATTCTTCTAGCACGGATTTTATCTGCTCAACGAAAGTTTGAAGATGCAGAGCTTGTTATCGATGCTGCTCTAGATCAAAGTGGGAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTACGTATTGCACAGGGAAAATTAAAGAATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAGGTCCAAAATAAAAGTTTAGGCACCGCAAGTAAGAGTAAGGTAAACCGCGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAAAGTGTACACGGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTAGCAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAGGGTTTAGTTTTTGAAGCCAGAGGTGTTCATCAAGAGGCTCTGAAATCATTTAGGAAAGCATTAGATATTGAACCCAACCATGTGCCAAGTTTGATATCTACAGCGTGTGTACTCAGAAAACTTGGTGGTCAATCATCTTCAATAGTTAGAAGCCTTCTCACTGATGCGTTGCGCCTTGACAGAACAAACCCATCTGCTTGGTACAATCTTGGACTGTTCTACAGAGATGATTTGGGGACATCGGCAATGGAAGCTGTTGAATGCTTTGAAGCTGCAGCTTTTCTTGAAGAATCTTCTCCCATCGAACCCTTTAGATAG 2328 0.4107 MMEKTLFSFLFLPLLRSFLSFLLLSMIPIRPFLTFDFSKLGNRVECFSMRAKSLISKKQISLRLRKMIKCICSGEQLKVDELGYSSESLATRDYSASGGFSSRPGENDPKLDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNVEAALHVFEGIDIATVVPKIKVSISRRCEPNRRSSQSDAQPPMSMHAVTLILEAVFLKAKSLQALGRFQDAAQSCKTILDTVESALPEGWPENLVSDCKLQETVANAVELLPELWKLAGSPQDVISSFRRALLYHWNLGIKATARIQKEFAFFLLYSGCEASPPALRSQLDGSFVPRSNLEEAVLLLLILLRKSILGYIEWDPSLIDHLSFALSVSGEFMTLAQQVEELLPENVDRKERFYTLALCYCGEGEHTTALDLLRNSLNHRENSDCIKELLLASKICADKKIYTEEGIGYSSKAISQLNGKCMQMVAIANCLLGVLLSSKSKSVASESEKVFLQSEALSALKDSERTMRESDPYIVLHLCLEYAEQRKLSIAIEHAKKLIKLEGGSSVSAYILLARILSAQRKFEDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTASKSKVNRDRRLEMEIWHDLAKVYTALSQWQDAEVCLAKSEAINPYSASRWHTKGLVFEARGVHQEALKSFRKALDIEPNHVPSLISTACVLRKLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLFYRDDLGTSAMEAVECFEAAAFLEESSPIEPFR 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02506 775 SUPERFAMILY TPR-like 374 600 IPR011990 GO:0005515
Viun7g02506 775 SMART tpr_5 541 574 IPR019734 GO:0005515
Viun7g02506 775 SMART tpr_5 664 697 IPR019734 GO:0005515
Viun7g02506 775 SMART tpr_5 630 663 IPR019734 GO:0005515
Viun7g02506 775 SMART tpr_5 199 232 IPR019734 GO:0005515
Viun7g02506 775 SMART tpr_5 384 417 IPR019734 GO:0005515
Viun7g02506 775 Gene3D Tetratricopeptide repeat domain 111 615 IPR011990 GO:0005515
Viun7g02506 775 Gene3D Tetratricopeptide repeat domain 616 772 IPR011990 GO:0005515
Viun7g02506 775 SUPERFAMILY TPR-like 578 745 IPR011990 GO:0005515
Viun7g02506 775 ProSiteProfiles TPR repeat profile. 664 697 IPR019734 GO:0005515
Viun7g02506 775 PANTHER PROTEIN NPG1 68 775 IPR043376 -
Viun7g02506 775 Pfam Tetratricopeptide repeat 665 697 IPR019734 GO:0005515
Viun7g02506 775 Pfam Tetratricopeptide repeat 515 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02506 Viun-Chr7 28965950 28969858 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02506 64 775 Calmodulin-binding Proteins AT4G28600 52.812 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02506 K21843 - gmx:100789469 1261.51