Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02504 ATGAGAGCTAAGAGTTTGATAAGTAAAAAGCAGATAAGCCTAAGATTGAGAAAAATGATTAAGTGTATATGCTCTGGGGAGCAGTTAAAGGTGGATGAATTAGGTTACTCATCGGAGTCCTTAGCAACCAGAGATTATTCAGCAAGTGGTGGCTTTTCATCTCGTCCTGGTGAAAACGACCCAAAGCTTGACAATACCAACATTGAAGAAGCAGAGTCTTCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCTTTGCTTGGAAGACTTGAGTATCAGAAAGGCAATGTGGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTGCTACTGTTGTTCCCAAGATTAAGGTTTCTATATCCAGAAGATGTGAACCTAATAGACGAAGTTCGCAAAGTGATGCTCAGCCTCCTATGTCAATGCATGCTGTTACTTTAATTCTTGAAGCTGTATTTCTCAAGGCCAAATCGTTGCAGGCTCTAGGAAGGTTTCAAGATGCTGCTCAGTCATGCAAGACGATTTTAGACACTGTTGAATCAGCTTTACCGGAAGGCTGGCCTGAAAACTTAGTTTCGGATTGTAAACTGCAAGAGACTGTGGCAAATGCTGTGGAACTGCTTCCAGAGTTATGGAAGCTTGCAGGCTCTCCTCAAGATGTGATCTCATCGTTTAGGAGGGCTCTGCTTTATCATTGGAATCTTGGCATTAAAGCCACTGCAAGAATACAAAAGGAATTTGCTTTTTTTCTTCTGTATAGTGGTTGTGAAGCTAGTCCTCCTGCTCTTCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAGCAACTTAGAAGAGGCTGTTCTTCTGCTTCTGATTTTGCTGAGAAAATCTATTCTTGGATACATTGAATGGGACCCTTCATTAATTGATCACCTTTCTTTTGCTCTAAGTGTTTCTGGGGAATTCATGACCCTAGCTCAGCAGGTTGAGGAATTGCTTCCTGAAAACGTGGACAGAAAAGAAAGATTCTATACTCTAGCTCTTTGTTACTGTGGAGAAGGTGAACATACGACTGCTTTGGATCTTCTAAGGAACTCTCTGAATCACAGAGAGAACTCAGACTGCATAAAGGAGTTACTTTTAGCTTCAAAAATTTGTGCAGACAAGAAGATTTACACTGAAGAAGGAATCGGATATTCTTCCAAAGCCATTTCTCAGCTGAATGGAAAGTGCATGCAGATGGTAGCTATTGCAAATTGCTTGCTGGGTGTTCTACTGTCGTCAAAATCAAAGTCAGTTGCTTCTGAATCAGAGAAGGTTTTTTTGCAGTCTGAAGCACTCAGCGCTCTAAAGGATTCTGAGAGAACGATGAGGGAAAGCGATCCTTACATTGTCCTTCATCTTTGTCTAGAATATGCTGAACAGAGGAAGTTGAGCATCGCTATTGAACATGCAAAGAAACTGATTAAGCTTGAGGGTGGATCTAGTGTCAGTGCATATATTCTTCTAGCACGGATTTTATCTGCTCAACGAAAGTTTGAAGATGCAGAGCTTGTTATCGATGCTGCTCTAGATCAAAGTGGGAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTACGTATTGCACAGGGAAAATTAAAGAATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAGGTCCAAAATAAAAGTTTAGGCACCGCAAGTAAGAGTAAGGTAAACCGCGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAAAGTGTACACGGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTAGCAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAGGGTTTAGTTTTTGAAGCCAGAGGTGTTCATCAAGAGGCTCTGAAATCATTTAGGAAAGCATTAGATATTGAACCCAACCATGTGCCAAGTTTGATATCTACAGCGTGTGTACTCAGAAAACTTGGTGGTCAATCATCTTCAATAGTTAGAAGCCTTCTCACTGATGCGTTGCGCCTTGACAGAACAAACCCATCTGCTTGGTACAATCTTGGACTGTTCTACAGAGATGATTTGGGGACATCGGCAATGGAAGCTGTTGAATGCTTTGAAGCTGCAGCTTTTCTTGAAGAATCTTCTCCCATCGAACCCTTTAGATAG 2184 0.413 MRAKSLISKKQISLRLRKMIKCICSGEQLKVDELGYSSESLATRDYSASGGFSSRPGENDPKLDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNVEAALHVFEGIDIATVVPKIKVSISRRCEPNRRSSQSDAQPPMSMHAVTLILEAVFLKAKSLQALGRFQDAAQSCKTILDTVESALPEGWPENLVSDCKLQETVANAVELLPELWKLAGSPQDVISSFRRALLYHWNLGIKATARIQKEFAFFLLYSGCEASPPALRSQLDGSFVPRSNLEEAVLLLLILLRKSILGYIEWDPSLIDHLSFALSVSGEFMTLAQQVEELLPENVDRKERFYTLALCYCGEGEHTTALDLLRNSLNHRENSDCIKELLLASKICADKKIYTEEGIGYSSKAISQLNGKCMQMVAIANCLLGVLLSSKSKSVASESEKVFLQSEALSALKDSERTMRESDPYIVLHLCLEYAEQRKLSIAIEHAKKLIKLEGGSSVSAYILLARILSAQRKFEDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTASKSKVNRDRRLEMEIWHDLAKVYTALSQWQDAEVCLAKSEAINPYSASRWHTKGLVFEARGVHQEALKSFRKALDIEPNHVPSLISTACVLRKLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLFYRDDLGTSAMEAVECFEAAAFLEESSPIEPFR 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02504 727 Gene3D Tetratricopeptide repeat domain 568 724 IPR011990 GO:0005515
Viun7g02504 727 Pfam Tetratricopeptide repeat 617 649 IPR019734 GO:0005515
Viun7g02504 727 ProSiteProfiles TPR repeat profile. 616 649 IPR019734 GO:0005515
Viun7g02504 727 SMART tpr_5 151 184 IPR019734 GO:0005515
Viun7g02504 727 SMART tpr_5 336 369 IPR019734 GO:0005515
Viun7g02504 727 SMART tpr_5 493 526 IPR019734 GO:0005515
Viun7g02504 727 SMART tpr_5 616 649 IPR019734 GO:0005515
Viun7g02504 727 SMART tpr_5 582 615 IPR019734 GO:0005515
Viun7g02504 727 Pfam Tetratricopeptide repeat 467 522 - -
Viun7g02504 727 Gene3D Tetratricopeptide repeat domain 62 567 IPR011990 GO:0005515
Viun7g02504 727 SUPERFAMILY TPR-like 152 549 IPR011990 GO:0005515
Viun7g02504 727 PANTHER PROTEIN NPG1 20 727 IPR043376 -
Viun7g02504 727 SUPERFAMILY TPR-like 530 697 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02504 Viun-Chr7 28965747 28969858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02504 16 727 Calmodulin-binding Proteins AT4G28600 52.812 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02504 K21843 - gmx:100789469 1251.5