Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02451 ATGGCGAAGGAACTCATGAAGGTCAACTTGAAGAAGCTCTCAGAAGCGGTGACATGTTATTTGTGCAAGAGATGGCTGAGAAACGCAGCCACTATAACAGAATGCTGTCATAGCTTTTGCAGGGAATGTATAGAAAAGAAGTTAATAGATGAGAAATTAAATCATTGTCCGGTTTGCAATACAGACTTGGGTTGTTCTCCACTCGACAAATTAAGGTCAGATACTCGTAAGCAAGATTTGAGGGACAAAATTTTCCCACCTCAAGATTATAATGATGAGGAACCTGCCGATAAATTGGTAGAAAAAATAAAGAAGAATTTAGTTTTGTCATCACAACCCAATAGAGAAATATCCAAATCTGGTTTTAGAAAAGAAGCAGATCTTTCATCTCCCAAACCTGATAAAGTGGAAGATGCAAAGGAAGATGAAAAGCAGGGTGAGGCTGAATTTGGGGAAGAAGGTGCTACAATTGGATCCGCTAGAAGAGCGAAAGCTGCGGCAAGAATAAAATTTATCTGCCCTGCACAACCTTCAGGAAAAGAAAAGACAGAGGGTGATCAGCCTCGAGTTGAAACTTCCAGCGGAACTCTCAAAATCAGAATTCCGAATCCTTCAAAACCAAACACTGAGTTAAGGAAAGAAAAGGCTGAAATGTTTGAGCCAGTAAAAAGCAAGGTGGGAGCTGGAAGAAAACGCAAGTCCCGTAATAATTCCACCATGCAAGAAAATGGTGCGACTTCAGTACCTGTGCACTCTAATGACGATGACCCTCAGGTTGGTATGGTCGAAATCGACAACCGTAGTCACAAAACTGATGGTAAGAAAAACGAGTCAATTCCTTCGAGCTCTGAATCAATGAAACCTATTGCGAGCATCCAAGAAAGAAGGCCAAAACTCTCGGAGGACTTGAACTTTCCAGCAGCAGCTGAAACTGATTCCGACAGTGAAAGCAGCAGAGAGTTTGGTCCAATCTGGTTCTGCTTACTTGCTTCGGAAGAGAATAACGGACTTGAACCACTGCCACAACTATCTTCGTGTTACCTACGGGTCCAGGATGGCAATGTGACCGTTTCCTATATAAAGAAGTATCTGGTGAAGAAGCTCGGTCTTGCAAGTGAAAATGAGGTGGAGATCTCATTATATGGGCAACCTGTTTTATCTTCATGGAAACTGAACAGCTTAGTAGACATGTGGTTGCGAGCAATGCCAAAGAATGAGATTGTGACAACTTTTGGAAGTTCAGCCAAGGATTTTATTATGGCTCTTTCGTATGGTCGAAAGGCTTAA 1287 0.4204 MAKELMKVNLKKLSEAVTCYLCKRWLRNAATITECCHSFCRECIEKKLIDEKLNHCPVCNTDLGCSPLDKLRSDTRKQDLRDKIFPPQDYNDEEPADKLVEKIKKNLVLSSQPNREISKSGFRKEADLSSPKPDKVEDAKEDEKQGEAEFGEEGATIGSARRAKAAARIKFICPAQPSGKEKTEGDQPRVETSSGTLKIRIPNPSKPNTELRKEKAEMFEPVKSKVGAGRKRKSRNNSTMQENGATSVPVHSNDDDPQVGMVEIDNRSHKTDGKKNESIPSSSESMKPIASIQERRPKLSEDLNFPAAAETDSDSESSREFGPIWFCLLASEENNGLEPLPQLSSCYLRVQDGNVTVSYIKKYLVKKLGLASENEVEISLYGQPVLSSWKLNSLVDMWLRAMPKNEIVTTFGSSAKDFIMALSYGRKA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02451 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Viun7g02451 428 MobiDBLite consensus disorder prediction 258 277 - -
Viun7g02451 428 MobiDBLite consensus disorder prediction 189 203 - -
Viun7g02451 428 MobiDBLite consensus disorder prediction 114 318 - -
Viun7g02451 428 Gene3D - 304 406 - -
Viun7g02451 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 427 IPR044807 GO:0004842
Viun7g02451 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Viun7g02451 428 MobiDBLite consensus disorder prediction 207 227 - -
Viun7g02451 428 SUPERFAMILY RING/U-box 12 68 - -
Viun7g02451 428 SMART ring_2 19 59 IPR001841 -
Viun7g02451 428 MobiDBLite consensus disorder prediction 238 253 - -
Viun7g02451 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Viun7g02451 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
Viun7g02451 428 MobiDBLite consensus disorder prediction 118 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02451 Viun-Chr7 28626254 28630198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02451 5 86 C3H Transcription Factor Family AT2G30580 48.780 1.01e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02451 K16277 - gmx:102669950 274.633