Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun7g02450 | ATGGCGAAGGAACTCATGAAGGTCAACTTGAAGAAGCTCTCAGAAGCGGTGACATGTTATTTGTGCAAGAGATGGCTGAGAAACGCAGCCACTATAACAGAATGCTGTCATAGCTTTTGCAGGGAATGTATAGAAAAGAAGTTAATAGATGAGAAATTAAATCATTGTCCGGTTTGCAATACAGACTTGGGTTGTTCTCCACTCGACAAATTAAGGTCAGATACTCGTAAGCAAGATTTGAGGGACAAAATTTTCCCACCTCAAGATTATAATGATGAGGAACCTGCCGATAAATTGGTAGAAAAAATAAAGAAGAATTTAGTTTTGTCATCACAACCCAATAGAGAAATATCCAAATCTGGTTTTAGAAAAGAAGCAGATCTTTCATCTCCCAAACCTGATAAAGTGGAAGATGCAAAGGAAGATGAAAAGCAGGGTGAGGCTGAATTTGGGGAAGAAGGTGCTACAATTGGATCCGCTAGAAGAGCGAAAGCTGCGGCAAGAATAAAATTTATCTGCCCTGCACAACCTTCAGGAAAAGAAAAGACAGAGGGTGATCAGCCTCGAGTTGAAACTTCCAGCGGAACTCTCAAAATCAGAATTCCGGTAAAGAATCCTTCAAAACCAAACACTGAGTTAAGGAAAGAAAAGGCTGAAATGTTTGAGCCAGTAAAAAGCAAGGTGGGAGCTGGAAGAAAACGCAAGTCCCGTAATAATTCCACCATGCAAGAAAATGGTGCGACTTCAGTACCTGTGCACTCTAATGACGATGACCCTCAGGTTGGTATGGTCGAAATCGACAACCGTAGTCACAAAACTGATGGTAAGAAAAACGAGTCAATTCCTTCGAGCTCTGAATCAATGAAACCTATTGCGAGCATCCAAGAAAGAAGGCCAAAACTCTCGGAGGACTTGAACTTTCCAGCAGCAGCTGAAACTGATTCCGACAGTGAAAGCAGCAGAGAGTTTGGTCCAATCTGGTTCTGCTTACTTGCTTCGGAAGAGAATAACGGACTTGAACCACTGCCACAACTATCTTCGTGTTACCTACGGGTCCAGGATGGCAATGTGACCGTTTCCTATATAAAGAAGTATCTGGTGAAGAAGCTCGGTCTTGCAAGTGAAAATGAGGTGGAGATCTCATTATATGGGCAACCTGTTTTATCTTCATGGAAACTGAACAGCTTAGTAGACATGTGGTTGCGAGCAATGCCAAAGAATGAGATTGTGACAACTTTTGGAAGTTCAGCCAAGGATTTTATTATGGCTCTTTCGTATGGTCGAAAGGCTTAA | 1293 | 0.42 | MAKELMKVNLKKLSEAVTCYLCKRWLRNAATITECCHSFCRECIEKKLIDEKLNHCPVCNTDLGCSPLDKLRSDTRKQDLRDKIFPPQDYNDEEPADKLVEKIKKNLVLSSQPNREISKSGFRKEADLSSPKPDKVEDAKEDEKQGEAEFGEEGATIGSARRAKAAARIKFICPAQPSGKEKTEGDQPRVETSSGTLKIRIPVKNPSKPNTELRKEKAEMFEPVKSKVGAGRKRKSRNNSTMQENGATSVPVHSNDDDPQVGMVEIDNRSHKTDGKKNESIPSSSESMKPIASIQERRPKLSEDLNFPAAAETDSDSESSREFGPIWFCLLASEENNGLEPLPQLSSCYLRVQDGNVTVSYIKKYLVKKLGLASENEVEISLYGQPVLSSWKLNSLVDMWLRAMPKNEIVTTFGSSAKDFIMALSYGRKA | 430 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun7g02450 | 430 | MobiDBLite | consensus disorder prediction | 114 | 320 | - | - | |
Viun7g02450 | 430 | MobiDBLite | consensus disorder prediction | 240 | 255 | - | - | |
Viun7g02450 | 430 | ProSitePatterns | Zinc finger RING-type signature. | 35 | 44 | IPR017907 | - | |
Viun7g02450 | 430 | Pfam | Zinc finger, C3HC4 type (RING finger) | 19 | 59 | - | - | |
Viun7g02450 | 430 | SUPERFAMILY | RING/U-box | 12 | 68 | - | - | |
Viun7g02450 | 430 | Gene3D | - | 306 | 408 | - | - | |
Viun7g02450 | 430 | SMART | ring_2 | 19 | 59 | IPR001841 | - | |
Viun7g02450 | 430 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 110 | IPR013083 | - | |
Viun7g02450 | 430 | ProSiteProfiles | Zinc finger RING-type profile. | 19 | 60 | IPR001841 | - | |
Viun7g02450 | 430 | MobiDBLite | consensus disorder prediction | 260 | 279 | - | - | |
Viun7g02450 | 430 | MobiDBLite | consensus disorder prediction | 118 | 150 | - | - | |
Viun7g02450 | 430 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 2 | 429 | IPR044807 | GO:0004842 | |
Viun7g02450 | 430 | MobiDBLite | consensus disorder prediction | 209 | 229 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun7g02450 | Viun-Chr7 | 28626254 | 28630198 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun7g02450 | 5 | 86 | C3H Transcription Factor Family | AT2G30580 | 48.780 | 1.03e-21 | 94.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun7g02450 | K16277 | - | gmx:102669950 | 278.87 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun7g02450 | 7 | 28626254 | 28630198 | Viun7g02450 | 7 | 28626254 | 28630198 | ECH |