Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02436 ATGGTTGGGTTGGAGCTCGTTCCCATAGGTACAATTCTGACATTGGTAACTTCACAAATCTTGAAAACAGCTCAAGCAGCATCTGATGTTCTTATTGGAAAAGAAAGTTTCAAGGCCCTTTCAAAACATCTATTTGATATTGAGCCAGTGCTGAAGGAATTGCAGCTTCAAGAATTGAATGACTCTCAAGCCGCAAGGGTTGCTCTGGAGTCTCTTGAAGCTGATGTTAAGAAGGCAAATAATTTGGTGGAAAAGTATAAGAACCGTGGCCGTTTTTACTTACTGATTAAGTGTCGATCAATTGTTGAGGAGGTTGAACAAGTCACAAGGGATATCGGAAAGTCTCTGGCTGCATTGTCTATTGCAAACACTGAAGTGCTATCAAGAATTTCTGATCAGGTCAATAGATTGCAAGATGAGATGCAAAGGGTGGAGTTTGAGGCTTCCCAGTCCCAGATTCAAATTGTTGACAAGTTAAACCAGGGACTCAGAGAACAGAAACTAGATCAGGCTTTTGCAAATGACATGTTAGAGGAGATAGCAAGGGCAGTTGGGGTGCCAGTGGAACCCTCAGAGATAAGCAAAGAGTTGGCTAGCATTAGGAAGGAAAAAGAAGAAGCTTCTGAAAAGAAAGAAAGAGCTGAATGTGTTCTTTTGGATCAGATCATTCAGTTACTCTCTCGAGCTGATGCTGCAAGGGATTATGAAGAAGTAGAGAGGCAATACTTTGAAAGGGTTAAGGTGATAGAGAAATATGATTCAAGGGAAAAATATATCCCCCCACTCAATTCTTTCCATTGTTCTATAACTGGAGCTGTTATGGAAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGACATGCTATTGAAGCTTGGTTTTATGATGGCAACAGGAAAGACCCAGAAACTAATGATGTTCTTGAAGATACTACCTTGAGGTCTAACATTCCTCTAAGACAATCTATTGAAGAATGGAGAGAACTTAATTATTGTCTGATAATAAGGTCTATCAGAGAAAATTTATTATCATATTCTGACCTGCAAGAATCCCTGACCCAAATGCAGGCTCTTGTAAGAAAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTGTTATCTCTATCCTTGGGAGCTCTGATGACAAAGAAGTAAAGAGGAAGATTTTGATAACTTTGAAGGATGCTGTTGAGGGGAATACAAGAAACAAGGAGAAAGTGGCTGAATCTCGAGGATGGGATCACGTTCTTTCCTGCTTAGGCAGTGACTCCAGCATTTCCAAGGAAGCAATTGATCTGCTATATGAACTGCTTCAAGAACAATCTGGTTGGAATCAATATCTCTGTAAAAAGCTTTCTGAAAATCGCACTGCAGTTGGGTCCCTTGTTGCCATTCTAAAGAATCTCTCCGGTGCCGAAGTAGCCGAAAAGATTTTGGTGAAGCTTTTTGAACTAAACGAGGAAACAATTACCAGTGCTGCTAATTTTGGTTGGTATAAACCACTTGTTGATCGCATGATTGAAGGACCAGATTCAAGAATATCAATGACAAAAGCCATTGTTAATTTGGAGTTGAATGCTTCAAACTTGAAACTCCTTGGCAGTGAAGGAGTTATACCTCCTTTGCTAGAAATGCTGTCGGGAAGCGCAGAATCAAAAGACTTGTCACTGTCAGCCCTGATTAAATTAGCAGGATCTCATGCCAATAAAGGAATTATTGCTGCATCTGGAGGAGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGACACGGGCATTCATCATCACTAAATGCTCTGAAATCATTGAGAAGCTTTCTTCAAATGGTGATGGAATTGATTTCTTCGTTGATGGAGAGGGGAAACAGCTTGAGTTAGATTCCATCATCACCAAAGTGCTAGCTTTGCAGCAGAGTTCAAGCTTAGGTCCTAGCATCCGTAAGCCTGCACTGCGTGCACTTCTTGGCATTTGCAAGTTTGAGACTGATTTGGTGAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGATCCCGACTCAGAAATCAGGGAGACTTCCATAATTCTACTGTATCTTTTCTCTCAACATGAGCCACAAGGAGTAGTTGAATACCTCTTCAAGCCTAGAAGGCTCGAAGCCTTGATTGGATTTCTTGAGAGTGAGGAGAATGATAATGTACAGATGGCTGCTGCTGGTTTACTTGCTAACCTGCCAAAATCAGAACGAGAACTCACAATGAAGTTGATTGAGCTGGGTGGACTTGACGCAATCATAAGCATTTTGAAAACTGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACAAATATTGAGTCACAGAAAGATTTGGTTAAACGCGGAATATATCCTTTGCTTGTAGATTTTCTCAACACTGGTTCAGTCACGGCAAAGGCAAGAGCAGCAGCTTTCATTGGTGATCTTTCGATGAGCACTCCAAAGCTCATAGTTACTCCGAAGCCAAGTGGTTGCTGTCTTTTCAGATCATCACGTGGTCCTTTGTGTCCAGCACATGTGAGTGAATGCAGTGTGAACAGCACATTTTGTCTTTTGGAGGCTAAGGCTCTACCTGGCTTGATAAAGCTATTACATGGGGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCCACATTGGTTTTGGAAGACTTTCCTCAAAGGGGAGCTCGTGTCTTGCATGAGAACAATACAATAAGATCCTTATTAGACATTTTGAACTGGGGAACTGATTCTCTCAAGGCAGAAGCTTTAGGACTGTTAGAGAAGGTGTTTGTGTCAAAGGAAATGGTAGAATACTATGGAACAACAGCTAGATCACGTCTTATTTGTTTGACTGCAATGAATATATATGGAGATGGTCACCTCAGGAGAAAGGCGGCTAAAGTACTATCATTGCTTGAACGCTATTCAAAGTCATCATCATCTGCCATCTCCGGTGTTCTAGAGTGA 3036 0.4111 MVGLELVPIGTILTLVTSQILKTAQAASDVLIGKESFKALSKHLFDIEPVLKELQLQELNDSQAARVALESLEADVKKANNLVEKYKNRGRFYLLIKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVNRLQDEMQRVEFEASQSQIQIVDKLNQGLREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEASEKKERAECVLLDQIIQLLSRADAARDYEEVERQYFERVKVIEKYDSREKYIPPLNSFHCSITGAVMEDPVSLCTGTTCERHAIEAWFYDGNRKDPETNDVLEDTTLRSNIPLRQSIEEWRELNYCLIIRSIRENLLSYSDLQESLTQMQALVRKNSINKDWISIGELTDIVISILGSSDDKEVKRKILITLKDAVEGNTRNKEKVAESRGWDHVLSCLGSDSSISKEAIDLLYELLQEQSGWNQYLCKKLSENRTAVGSLVAILKNLSGAEVAEKILVKLFELNEETITSAANFGWYKPLVDRMIEGPDSRISMTKAIVNLELNASNLKLLGSEGVIPPLLEMLSGSAESKDLSLSALIKLAGSHANKGIIAASGGVPLILDLMFSPRTRAFIITKCSEIIEKLSSNGDGIDFFVDGEGKQLELDSIITKVLALQQSSSLGPSIRKPALRALLGICKFETDLVKKAILAANGVSLILPLLDDPDSEIRETSIILLYLFSQHEPQGVVEYLFKPRRLEALIGFLESEENDNVQMAAAGLLANLPKSERELTMKLIELGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQKDLVKRGIYPLLVDFLNTGSVTAKARAAAFIGDLSMSTPKLIVTPKPSGCCLFRSSRGPLCPAHVSECSVNSTFCLLEAKALPGLIKLLHGEVHATAYEAIQTLSTLVLEDFPQRGARVLHENNTIRSLLDILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARSRLICLTAMNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02436 1011 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Viun7g02436 1011 Gene3D - 513 845 IPR011989 -
Viun7g02436 1011 Gene3D - 6 123 IPR036537 GO:0007166
Viun7g02436 1011 Gene3D - 862 1006 IPR011989 -
Viun7g02436 1011 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Viun7g02436 1011 SUPERFAMILY RING/U-box 249 330 - -
Viun7g02436 1011 Coils Coil 127 154 - -
Viun7g02436 1011 CDD MLKL_NTD 10 145 - -
Viun7g02436 1011 Gene3D - 347 501 IPR011989 -
Viun7g02436 1011 Coils Coil 62 89 - -
Viun7g02436 1011 SUPERFAMILY ARM repeat 196 953 IPR016024 -
Viun7g02436 1011 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1003 - -
Viun7g02436 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 333 IPR013083 -
Viun7g02436 1011 SMART arm_5 870 910 IPR000225 GO:0005515
Viun7g02436 1011 SMART arm_5 797 837 IPR000225 GO:0005515
Viun7g02436 1011 SMART arm_5 711 752 IPR000225 GO:0005515
Viun7g02436 1011 SMART arm_5 406 445 IPR000225 GO:0005515
Viun7g02436 1011 SMART arm_5 532 571 IPR000225 GO:0005515
Viun7g02436 1011 SMART arm_5 668 708 IPR000225 GO:0005515
Viun7g02436 1011 SMART arm_5 754 794 IPR000225 GO:0005515
Viun7g02436 1011 SMART arm_5 572 614 IPR000225 GO:0005515
Viun7g02436 1011 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Viun7g02436 1011 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02436 Viun-Chr7 28449126 28454105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02436 264 966 U-box Gene Family AT1G20780 27.719 4.35e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02436 - - gmx:100783638 1699.87