Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02424 ATGGAGGGAAGAGAGAGTTTTGGTGTTGTGGTTGGTGATGAAGCCCCCGAGAGCTTCCATGTTGCTCCTAGAATAATTGAGAATAACTTGGACTTTTCAAGGGCCGTCGTGCCTGCGCCGTCGACGGAGGGGAAAAAGAAGAGAGGGAGACCGAGGAAGTACGGGCCGGACGGGAAAGTGGCTTTGGGGGCGGTGACGGCGCTTTCGCCGATGCCGATTTCATCGTCGATTCCGTTGACCGGCGAGTTCTCCGCTTGGAAGAGGGGTAGAGGAAGGCCTGTTGAATCTATCAAGAAGTCATCGTTCAAGTTTGAGGTTGAAAGCCCTGGTCAAGGTGATGGAATAGCATACTCAGTTGGTGCCAATTTCACACCACATGTGCTCACAGTAAATTCTGGCGAGGATGTCACTATGAAAATCATGTCCTTCTCACAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGGACAATTTCAAATGTTACGCTTCGTCAACCATCTTCTTGTGGGGGTACTTTAACATATGAGGGACGGTTTGAAATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTACAAGAAGCAGATCTGGTGGAATGAGTGTCTCTTTGGCCGGTCCAGATGGTAGAGTAATGGGGGGTGGGCTTGCTGGTTTACTAGTAGCCGCTGGTCCAGTTCAGGTTGTTGTGGGCAGTTTTCTTCCTGGTCACCAGTTGGAGCATAAAAACAAGAAGCAAAGAGTGGAGCATGTGCATATATCAACTGTTAACCCTTCACCTGTTAATATCATCTCTAGTGAGGAACTAAAAGTCAGTTTTGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTCCAAGAAGAGAATATTGTTTCTTTTAACAATGGTCAAGACTCTAGGAACTCATCTCCTGATGATAAAGATCCTTTACCCGACAAGGAGTCTAATCTAAGCCAATCAAACGCTGAGGCTGCTGCATGCTAA 999 0.4695 MEGRESFGVVVGDEAPESFHVAPRIIENNLDFSRAVVPAPSTEGKKKRGRPRKYGPDGKVALGAVTALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEVESPGQGDGIAYSVGANFTPHVLTVNSGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGITRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKNKKQRVEHVHISTVNPSPVNIISSEELKVSFGGVKPIMTPAAFQEENIVSFNNGQDSRNSSPDDKDPLPDKESNLSQSNAEAAAC 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02424 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 310 IPR039605 GO:0003680
Viun7g02424 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 122 242 - -
Viun7g02424 332 ProSiteProfiles PPC domain profile profile. 120 264 IPR005175 -
Viun7g02424 332 MobiDBLite consensus disorder prediction 37 56 - -
Viun7g02424 332 FunFam AT-hook motif nuclear-localized protein 1-like 125 256 - -
Viun7g02424 332 MobiDBLite consensus disorder prediction 298 332 - -
Viun7g02424 332 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Viun7g02424 332 SMART AT_hook_2 45 57 IPR017956 GO:0003677
Viun7g02424 332 Gene3D - 125 263 - -
Viun7g02424 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 125 238 IPR005175 -
Viun7g02424 332 CDD DUF296 124 238 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02424 Viun-Chr7 28282839 28289366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02424 45 315 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 58.451 2.38e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02424 - - gmx:100776862 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02368 4 39131730 39138413 Viun7g02424 7 28282839 28289366 ECH
Viun7g02424 7 28282839 28289366 Viun7g02424 7 28282839 28289366 ECH
Viun4g02368 4 39131730 39138413 Viun7g02424 7 28282839 28289366 PCT