Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02408 ATGATGGTTGTGAGCGGAGGGAAGGGCCTCAAACGCGCCGCGAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTTACGTTCCCTTCGCCGTCCCTCGCCGAGGCGGAGAACTTCGCCGGCGGGCCCTTTCGCTCCAACGTTCGCTCCTTTCTGACGAAGCACGCGCTGCTTCCGCCGCCGTACGCGCTGTTCCCTCATCTGCTGACGTGGCAGATACTCTTTCGCGTCGGCGAGCTTACCGAAGGCCCCGACTCGCCTGTTGTGTGCCTTGACGTTGTGGAAGAAGACGTCGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGTGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGGAAGCGATACCATTTTATAATCAAAGCCGATGGAAGCTCTATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGACATCCTTCATTTGTCAGAATCCAAATGCAAGTCTTGCAATCACGTGACCACCACTGATGATGTTGAAGACTGGGTGTACCACCAATTAGAGAACACGACTCATCTTTTACACGGCGTAATCCACGGCAATGGATATGGGCACCTTCTACGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTTGTCATATTATGGATTTCTGGGATCGCCTATGCAACACTCTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGCCTAGAGTATCGTTTGCTCCATGCCATTATGAAGGGACACCCATGGTATGGTGACTGGGGTTATAGATTTGGCTCTGGTAGCTATTGTCTCACGCATGAAGCATACAAGTCTGCTGTTGAAAACCTATCCAACCTACCCTTGTCCACCTTTTCCCAGGGACAGATGCCGGTACCCCATTCCCGTGTGCAGGACATGATAAAATATTTCCAGTCTTTATCAGAGCATGAGCTTGTAAATATAAGAGACCTCTTTTGTTTCATAATGGGTTTGATTGGTGATGCTCGCAAGAATGTGTCAAATGTTGATGACACAGCCTGCAAGAAGCGTCGTTTTAATGCTTCTGGACTGTCAATTTCTTGGGAGAAGGCTGACATTGAACGTGTGGAGCAAGCTATGATCAGAGTGCTGCGTGCAGTGTCCGAGTCTAAGTGGGTAAACTGGCGTGCTCTTAGGGGTGCGGCCTGCAAGGTGGGCTCTCCAGAACTGCTTGATTATTGCCTGGGAGAACTGGGGGGGAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTTGAGCCTGCCACTGGTGCTTGCTATGGAATTTTAGCGAACAATAACTCTTCAGGCTCGAAGTATCCATCCGAAGAAAACCTCCTACAGTGCTTGAGATATTTATACGACTCTCTGCTTCATCCACAGATGATGGTAAACTATGTTGAAGCAGGGACGAGGACTCTGGCGATGAGCTCAGTTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTATAGTCCTGAGTTGTTACCATTGTCAGATTTGCACAAGTTACGCATCTCATGTCAGGTTGAAATCGTAGATGAATCTGAAGATCCAGAAGCCATAGCTCCAACGGAATTAATTGTGCTGCCCATGAATGCCACAGTGGCCGAGCTTAAAAGTCAAGCAGCGATTGCTTTTCAAGATGTATATCTAATGTTCAGAAGATTTCAAGTTGATGAGGTAGTAGGCTATAGCGGTGTTGAAGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGTAGTTTGTGTTCGAGGAAGATGCGTTGGGAAAAATGGGTTAAGTAAGTTCCGGATGGAACGGGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGGGCGAAGGATGACGATGGGGAGAGAATGTTGGCGTGCGATATATGCGGAGTGTGGCGGCACACCAGGTGTTCTGACATCCATGATTCTGATCCCGTTCCAGCACGTTTTGTTTGCCTCAAATGCCAAAACTCTGAATCAAAACTCAAATCTGGTGGCCACTGCAAAGATGAGACTGTCACTAACGTTACCACTCCCACTAGTTGTTTCGGGAAAACCTTCCCAGTGCCATCTGATGTTAGTTAG 2139 0.4834 MMVVSGGKGLKRAAKKRVTADFYDFLTFPSPSLAEAENFAGGPFRSNVRSFLTKHALLPPPYALFPHLLTWQILFRVGELTEGPDSPVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVIHGNGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCNTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYRFGSGSYCLTHEAYKSAVENLSNLPLSTFSQGQMPVPHSRVQDMIKYFQSLSEHELVNIRDLFCFIMGLIGDARKNVSNVDDTACKKRRFNASGLSISWEKADIERVEQAMIRVLRAVSESKWVNWRALRGAACKVGSPELLDYCLGELGGKMVYGGMVVNSRCNPQTGVYEFRLEPATGACYGILANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYVEAGTRTLAMSSVQKLFDCKQFVKDYSPELLPLSDLHKLRISCQVEIVDESEDPEAIAPTELIVLPMNATVAELKSQAAIAFQDVYLMFRRFQVDEVVGYSGVEDSTQVKLLLGSKDVVCVRGRCVGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDSDPVPARFVCLKCQNSESKLKSGGHCKDETVTNVTTPTSCFGKTFPVPSDVS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02408 712 SMART PHD_3 628 674 IPR001965 -
Viun7g02408 712 CDD PHD_MMD1_like 628 673 - -
Viun7g02408 712 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
Viun7g02408 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 680 IPR013083 -
Viun7g02408 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 16 688 - -
Viun7g02408 712 Pfam PHD-finger 629 675 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02408 Viun-Chr7 28162348 28167534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02408 79 673 PHD Transcription Factor Family AT5G22260 31.024 8.12e-88 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun7g02408 PHD 8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02408 K26271 - gmx:100818189 1334.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02408 7 28162348 28167534 Viun7g02408 7 28162348 28167534 ECH