Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02329 ATGGAGAAGAAGAAGCTCAACCTCATCATCCCTAATCCTCAACCTCATGGAATCATTCCACGCCGCAATTCCCCAATCTCTCAAGGACAAGGTTCACTGTGGATGATGAATTTGAGGAGTGGCGAAACAATGGATTCTGGAGCTTATCCGGAGCGTCCAGGGGAGCCAGACTGTTCATATTACATCAGAACTGGACTCTGTAGATTTGGTGCAACGTGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGCGCTACATGCAAATTTCATCATCCTAAAGACCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATACTTTAGGCTATCCGCTCCGACCTAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGAAACACTTGCAAATTCCACCATCCTCAACCGAGTAATATGATGCTTTCGTTACAGGATTCCTCCGTTTACCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCGTATGCAGGGGGAATTACAAATTGGTCAAGGGCATCATACATCCCTAGTCCCCGCTGGCAGGGCCCTTCAAGTTATGCACCCTTAATTCTTCCTCAGGGAGTAGTTTCGGTGCCTGGGTGGAGTGCATACGGTGGTCAAGTGGGATCAATCTCTACTTCAGACAGTCATCAGCAAGCAATGAGAAATGGTCAAACGTATGGAACTTCTCGCCAAAGTGAGCTAGCAAACGCAGGATCACCTGGAGCATATTCTCAATACCGTTCTGGCACTGTTCCAGTAGGGTTTTATGCATTGCAGAGGGAAAACATATTTCCTGAGAGACCTGGCCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGCGCAGTCTGTCGGTTCCACCACCCAAGCGAAAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGTCCGGGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGCCCGAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATAATATCTCTGCATCGCCTTCAGCTGATGCCCCGAGCAGGCATCTGCTACGATCTTCATCAGGAACTGCTGCGTTAAATTTATCTTCGGAAGGACTTGGTGAGTCGAGCTCAGCAGCAACGCCCAGGCGGCTTTCATTATCAGAGACAAGACAGATACCTTCTGGTGATGATGACATCGATGATGATGGATGA 1338 0.4716 MEKKKLNLIIPNPQPHGIIPRRNSPISQGQGSLWMMNLRSGETMDSGAYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNTLGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLQDSSVYPTVHSPTTPGQQSYAGGITNWSRASYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYGGQVGSISTSDSHQQAMRNGQTYGTSRQSELANAGSPGAYSQYRSGTVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPSERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISASPSADAPSRHLLRSSSGTAALNLSSEGLGESSSAATPRRLSLSETRQIPSGDDDIDDDG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02329 445 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Viun7g02329 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 79 IPR000571 GO:0046872
Viun7g02329 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 330 IPR000571 GO:0046872
Viun7g02329 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 170 IPR000571 GO:0046872
Viun7g02329 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 377 IPR000571 GO:0046872
Viun7g02329 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Viun7g02329 445 FunFam Zinc finger nuclease 2 51 128 - -
Viun7g02329 445 Gene3D - 296 379 - -
Viun7g02329 445 MobiDBLite consensus disorder prediction 248 278 - -
Viun7g02329 445 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Viun7g02329 445 SUPERFAMILY CCCH zinc finger 353 377 IPR036855 GO:0046872
Viun7g02329 445 SUPERFAMILY CCCH zinc finger 101 126 IPR036855 GO:0046872
Viun7g02329 445 Gene3D - 51 131 - -
Viun7g02329 445 SUPERFAMILY CCCH zinc finger 57 80 IPR036855 GO:0046872
Viun7g02329 445 MobiDBLite consensus disorder prediction 408 434 - -
Viun7g02329 445 SUPERFAMILY CCCH zinc finger 146 171 IPR036855 GO:0046872
Viun7g02329 445 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Viun7g02329 445 Gene3D - 132 180 - -
Viun7g02329 445 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Viun7g02329 445 PANTHER PROTEIN PHOSPHATASE RELATED 40 402 - -
Viun7g02329 445 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Viun7g02329 445 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Viun7g02329 445 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Viun7g02329 445 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Viun7g02329 445 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Viun7g02329 445 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Viun7g02329 445 MobiDBLite consensus disorder prediction 408 445 - -
Viun7g02329 445 SUPERFAMILY CCCH zinc finger 308 333 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02329 Viun-Chr7 27370870 27376190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02329 33 444 C2H2 Transcription Factor Family AT3G02830 61.045 8.21e-175 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun7g02329 zf-CCCH 5.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02329 - - ccaj:109816515 803.897