Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02305 ATGGCGGCCTTCACGGTGACGGAGCTGAAGCAAAAGTTGAAGGATGCGATCGAAAGGATCGTGGAAGATGAAGATTACTCCGTTCACACTGCAGACAAAGCTATCCGTGTTCTTTCTGCACTCAAGGATTTGAAGTGCACCGCTTCTACCTCAATCAACGTCGATCTAATGACACCCGTTCCCCCACTATTTCAATGCCCTCTCTCCGGTCACTTGATGACAGATCCTGTTATCTTGACCACTGGACAGACTTTTGATCGTCCAGTCATCCAGAGGTGGCTGAATGAAATCAACGGAGCTAACCCTTGTACCCAACTTGTTCTCAGTCACTGTATTCTCACTCCCAATTTCATGCTCCAAGGCATGATTTCAGAGTGGTGCAGAGAAAACGGAGTTAACCTGCCAAATCCCGTTTTCGACATGTACAACGAACCACTAACCGAGGCACACAGACACCGTTTGCGATCTCTGCTCTTCAAGCTGTCACTGTCACTTCCTGAGCAGAAAGCAGCTGCAAAGGAGCTTCGTGAGTTAGCAAAAAGAATGTCCGCAGTTCGAACAGTCCTCGGGAGCACGCAAATGATTAAGCTTTTGATGCATCCGTTATCATCCGGCACAGCTCCTCCGGACCCCGAACTCCAAGATGATTTGATCGGAACTTTTGTAAACCTCGCAATACACGACACGAACAAGAAGTTGTTGGCAGAAAACGAAAAAGTGGTCTCCTTTCTGATTGATTCGTTGAAATCCGGACAAGTTCAGACAAGAAGCAATGCAGCTGCAGCTTTTGCGTCGATGGCATCTCTTGATTCGAACAAGCATATAATTGGAAGGGCTGGAGCTATAAAATACTTGGTGGATTTACTTGAAGAGGGAGATCCGTCAGCCATGAAAGATGCTGAATCAGCCTTGTTCAAACTATGCTTTGTTCGTGAAAACATAGGGAGGACCGTGCGAGAAGGGGCAGTGCAGATTATTCTTGGGAAGATCGTTGACCGTATTCTTGTTGATGAGATGTTATCACTGTTGGCACTTCTTGCCACACATACTAATGCCGTGGCAGCGTTGGTGGATCATGGCGGTGTCCGTTTATTGCTTGATATCTTGAGGGATACCACAGTAGAAAGCGTGAAGGAAAACGGTGCTGTAATTCTACATCTAATCTGTTACCATGACAAAGAGAAAAGGGTGGAAATTAAAGAGGAAGAAGTGGCCAACGGCACATTCTCAAAGATTGTTCAAAACGGGTCCTCTAGGGCTAGAAGGAAAGCTAACTCCATCCTTCACTGTCTTGGCATAGGTAAGTCCACTTTGCAAAAGAGTCCGAATTCAAAGTCGGAAAACACTCAGAGTCCAAGCTCTGGTGCATGA 1371 0.4639 MAAFTVTELKQKLKDAIERIVEDEDYSVHTADKAIRVLSALKDLKCTASTSINVDLMTPVPPLFQCPLSGHLMTDPVILTTGQTFDRPVIQRWLNEINGANPCTQLVLSHCILTPNFMLQGMISEWCRENGVNLPNPVFDMYNEPLTEAHRHRLRSLLFKLSLSLPEQKAAAKELRELAKRMSAVRTVLGSTQMIKLLMHPLSSGTAPPDPELQDDLIGTFVNLAIHDTNKKLLAENEKVVSFLIDSLKSGQVQTRSNAAAAFASMASLDSNKHIIGRAGAIKYLVDLLEEGDPSAMKDAESALFKLCFVRENIGRTVREGAVQIILGKIVDRILVDEMLSLLALLATHTNAVAALVDHGGVRLLLDILRDTTVESVKENGAVILHLICYHDKEKRVEIKEEEVANGTFSKIVQNGSSRARRKANSILHCLGIGKSTLQKSPNSKSENTQSPSSGA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02305 456 Gene3D - 164 447 IPR011989 -
Viun7g02305 456 CDD RING-Ubox_PUB 61 110 IPR045210 -
Viun7g02305 456 Pfam U-box domain 60 130 IPR003613 GO:0004842|GO:0016567
Viun7g02305 456 ProSiteProfiles U-box domain profile. 59 133 IPR003613 GO:0004842|GO:0016567
Viun7g02305 456 SUPERFAMILY ARM repeat 165 435 IPR016024 -
Viun7g02305 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 133 IPR013083 -
Viun7g02305 456 PANTHER U BOX DOMAIN-CONTAINING 18 431 - -
Viun7g02305 456 SUPERFAMILY RING/U-box 56 136 - -
Viun7g02305 456 SMART arm_5 349 390 IPR000225 GO:0005515
Viun7g02305 456 SMART arm_5 269 309 IPR000225 GO:0005515
Viun7g02305 456 MobiDBLite consensus disorder prediction 436 456 - -
Viun7g02305 456 SMART Ubox_2 63 126 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02305 Viun-Chr7 27261249 27262779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02305 122 428 U-box Gene Family AT3G07360 48.254 1.61e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02305 - - gmx:100806132 486.108