Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02282 ATGGAAAAGCTTTTCTTCACTCCATTCCCCAACTTGGAATACCCTTTGGATCAGTGTTCTATATTCCCATCACATCATTACCAGTCTCTTCTTCCCTCTTACGAAAATGGGTCCCTGGAAATGCTTCATGAAACACCATCCCAACACAAGGTTTCCTACAGAGGGGTTCGAAAGCGGGGACCTGGCAACTACGCGGCGGAGATAAGAGACTCTACGAGGAACGGGGCGAGGGTTTGGTTGGGAATCTTCGACACTGCCGAGGATGCTGCTTTGGCCTACGACCAAGCTGCAATAACAACACGTGGCGACAAAGCTGTTCTCAATTTCCCTCCTCATGTCGTTCTGCAATCGCTGCACAACATGGAGTTCAGGTTCCCCAGAGGCCTCTCTCCTGTTCTCGAACTCAAGAGGAGGAACTTGATGAAGAGGAGGGTGGGGCGCAGGAAGATGAGGAGACAAAAGCACATTGGAATGGAAAATATCGTGGTTTTGGAAGATCTTGGAGCAGATTATTTGGAAGAACTTCTCGCACTGTCTGAACATAAATTCTAG 552 0.4855 MEKLFFTPFPNLEYPLDQCSIFPSHHYQSLLPSYENGSLEMLHETPSQHKVSYRGVRKRGPGNYAAEIRDSTRNGARVWLGIFDTAEDAALAYDQAAITTRGDKAVLNFPPHVVLQSLHNMEFRFPRGLSPVLELKRRNLMKRRVGRRKMRRQKHIGMENIVVLEDLGADYLEELLALSEHKF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02282 183 ProSiteProfiles AP2/ERF domain profile. 52 110 IPR001471 GO:0003700|GO:0006355
Viun7g02282 183 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Viun7g02282 183 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Viun7g02282 183 Gene3D AP2/ERF domain 52 111 IPR036955 GO:0003700|GO:0006355
Viun7g02282 183 SMART rav1_2 52 116 IPR001471 GO:0003700|GO:0006355
Viun7g02282 183 PANTHER DNA-BINDING DOMAIN 45 176 IPR044808 GO:0003700|GO:0009873
Viun7g02282 183 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Viun7g02282 183 Pfam AP2 domain 53 99 IPR001471 GO:0003700|GO:0006355
Viun7g02282 183 CDD AP2 53 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02282 Viun-Chr7 27109006 27109582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02282 52 181 AP2-EREBP Transcription Factor Family AT3G23240 52.985 2.17e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g02282 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02282 K14516 - tcc:18600105 162.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02282 7 27109006 27109582 Viun7g02282 7 27109006 27109582 ECH