Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02254 ATGGCTACTTTTAAAGAAGAATGGGAAGCTGTTCTGGATGACCTTGAAACCGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGAATTGAACTTCCTAGCCTTTATAAGTTGATTGAAAAAGAAGCTCCTAATGTTTGCTCCACTGAAGCTTGGAAAAAGAGGAATCACTGGGTTGGCTCTGTTGCAACTTCAGAAATTGCTGAGTCAATTGCTGATGCGGAGAAGCATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTGTGATGAAACCCAGGAGCCAGTGAAAAATGAAGCTGAGGGTGATTGGGATATGTTCAATAAAATAGTTTCTGATGGGAGCGGCATTGATGCTACATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCAGCCTTGATGGGACTGAAATTTCCTGGAGTTGATGAGGTTGAGGAGATTGATGATGTTGATGGCAATTCTATGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAAGATGATGCAATTGTTGATAAGAAACTTCAAATCCGTTTGAAACATAGGAGGCATAAAAAGATAAGTAAACAGGAAGAAATGAGCACACCTATCCAGTTGACAGACAGCCCTACACAGAAGCCTTCATATGCTGATCATTTAGACCCTGATGCAAAAGAAGGAACTAATTATAATGGGAAAATAGTCTCTGACAATGGCAATGATACATGTGTTCTTATCGAGACTGATAATATTAAAGGTTTTGATGCCAGTCATCATCTTGACAAAGAAAAGCTTACAAGTAGTGATGGCTTGTCAGATCCACCCAAATCGTCAGTGGACGGTGTTATTGAACAGAGAGGAATCAAACGTGTAAGCAGTGGTGAGCTTGATGCTGAAAATAAAAAATCTCGGCTTGTTGTTATTGATAGTGATGATGAAGCAGGGGTCACTAAGGAGAAATTAGATTGCATTACTCAACAAGTAAAAGATGAATTAGGTAAGAATGGTACTGGTTCTCTTCCTTCAGAGTGTCTGGATGAAAAATTTTTGTGCACAGTTTGTGATAAAGTGGCTCTTGAAGTGCATCCACACCCTCTCTTGAAAGTAATTACTTGTGGAGATTGCAATCGCTTATTGAAAGAAAAGGCACATGAAAAGGATCTGAGACAAGATTGTTCGGAGGGTTATTGTACATGGTGTGGAGGAAACAGTGGATTAGTTAGTTGTAAATTATGCAATATTTTATTCTGCACCAAGTGTTTAAAGAAGAATATTGGTGTAGAATTGGTTTCTGAAACTCAGGCCACTAGCTGGCATTGTTGTTGTTGTCATCCAAACCTTTTGCAAAGACTGTCCTTGCAACTAGAGAAAGCTGTGGGGTCTGCTAGTATAGTAGTTTCTAGTTCTAGTAGTGATTCAGATGATTCAGACGATTCAGATAATTCAGATGACTCAGATGATTCAGATGCACAGATTAATGTTACAATGAGCTCCAAGCGAAGACCCAAAAAGAAGATTCGTAGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCAATCGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGAGAGGACAGTTTTCTGCTTCGTCAATTGAGATGAGCCCCGATGGATGTAATGGGAATTTATCAGAAGGTGCAAGTGTTGAAGTTCTTGGTGATGCTCTAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATTTCAGCTAAACTGAAGGCGCATCAGATATCTGGAATAAGATTTATGTGGGAAAATATTATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTTTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTTATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATCTGGGGTTAAGAACTGCACTTATAGTCACACCTGTCAACGTGCTACATAATTGGCGGCAAGAGTTCCTTAAGTGGAGTCCTTCTGAGTTAAAGCCACTCAAAGTCTTCATGCTGGAAGACGTACCAAGGGATAGAAGGGCGGAATTGCTTAAAAAATGGAGAGCTAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGAAACTTGTCTTTTGGGAAGCATGTGAAAGATCGGAACATGGCCAGAGAAATTTGCCATGCTTTGCAGGATGGTCCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACACAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCACTTACTGGGTCACCCCTTCAAAACAATCTCATGGAGTATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACATTGACAGATGTGAAAATTATGAACCAGAGGTCTCATATCCTATATGAAGAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTTGTGATAACTGTCAAGCTTTCTCCCTTGCAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTACCCAGGAGCATCCTGAAATGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTGGCACGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGCCAAGGATTATGCAAAAGAAGAGGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTCAAGTGACGAAAATTCTGATTATAATGTTCTTGCTGGAGAGAAGATGGGGTTTGCAAATGACTTACTGCAAAGAAAAGATGGTAATGGCTTTTTCCTGAAGGGTTGGTGGAATGACCTTCTTCATGGAAAAATATATAAAGAGATCGATCACAGCGGCAAAATGGTTTTGCTGATGGAGATACTAACTATGAGTTCTGATGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGACACCTCGACGTGGAAAACGAGGAAAGTTTTGGAAGAAGGGGAAAGATTGGTATAGGTTGGATGGGAGGACAGTGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTAATTTCAACAAGAGCTGGCTCTTTGGGTATAAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGACAGACAAAGCCTGTATTTGCTTATCGATTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTCACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGGCAGCAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGCGTTTGGTGATGATGACAACCCTGAGACTTTAGGCGATCTAGGTCAAGAAAATGAGCACCAAGAAAACCCAATTTCGGTTGGGCATCCTCTGAAACACACAGCACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTGATGGAAAGCTTACTTAGCAAGCATCATCCGTGGTGGATTGCCCATTATCATGAACATGAATCCCTGTTGCAAGAAAATGAAGATGAAAAACTATCCAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGGAAATCCCTGGAATGGGAAGAAGTCCAGAGAGTACCACTAGGTGAATCTATTGTGCCTATTCAGAAACCAGAAATTCCAAATGATGTGCCTCATGTATCAGAAACTTGTAACATCTTGCCGAGTAAACTAAGCCGACGTTTCGCGTCACGGAAATGCACAAACCTTGCGCACATGTTGACACTTCGAAGCCAGGGAACAAAATTCGGTTGCAGTACTGTCTGTGGGGAATGTGCCCAGGAGATTAGGTGGGAAGATTTGAAGAAGAGATAG 4179 0.4092 MATFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKLIEKEAPNVCSTEAWKKRNHWVGSVATSEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPVKNEAEGDWDMFNKIVSDGSGIDATFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDKKLQIRLKHRRHKKISKQEEMSTPIQLTDSPTQKPSYADHLDPDAKEGTNYNGKIVSDNGNDTCVLIETDNIKGFDASHHLDKEKLTSSDGLSDPPKSSVDGVIEQRGIKRVSSGELDAENKKSRLVVIDSDDEAGVTKEKLDCITQQVKDELGKNGTGSLPSECLDEKFLCTVCDKVALEVHPHPLLKVITCGDCNRLLKEKAHEKDLRQDCSEGYCTWCGGNSGLVSCKLCNILFCTKCLKKNIGVELVSETQATSWHCCCCHPNLLQRLSLQLEKAVGSASIVVSSSSSDSDDSDDSDNSDDSDDSDAQINVTMSSKRRPKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSIEMSPDGCNGNLSEGASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFLKWSPSELKPLKVFMLEDVPRDRRAELLKKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPEMLRKRCFFAGYQALARIWNHPGILQLTKEAKDYAKEEDAVENFLVDDSSSDENSDYNVLAGEKMGFANDLLQRKDGNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRTPRRGKRGKFWKKGKDWYRLDGRTVSSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFAFGDDDNPETLGDLGQENEHQENPISVGHPLKHTAPHSNGSSYSDKLMESLLSKHHPWWIAHYHEHESLLQENEDEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIVPIQKPEIPNDVPHVSETCNILPSKLSRRFASRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02254 1392 Pfam SNF2-related domain 654 954 IPR000330 GO:0005524|GO:0140658
Viun7g02254 1392 Coils Coil 5 25 - -
Viun7g02254 1392 CDD SF2_C_SNF 1027 1170 - -
Viun7g02254 1392 MobiDBLite consensus disorder prediction 502 539 - -
Viun7g02254 1392 MobiDBLite consensus disorder prediction 235 250 - -
Viun7g02254 1392 MobiDBLite consensus disorder prediction 224 269 - -
Viun7g02254 1392 PANTHER RAD54-LIKE 1 1390 IPR044574 GO:0016887
Viun7g02254 1392 MobiDBLite consensus disorder prediction 1220 1254 - -
Viun7g02254 1392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 891 1227 IPR027417 -
Viun7g02254 1392 SMART ultradead3 627 848 IPR014001 -
Viun7g02254 1392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 885 IPR027417 -
Viun7g02254 1392 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1039 1207 IPR001650 -
Viun7g02254 1392 SMART helicmild6 1062 1159 IPR001650 -
Viun7g02254 1392 Gene3D - 896 1238 IPR027417 -
Viun7g02254 1392 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 653 836 IPR014001 -
Viun7g02254 1392 MobiDBLite consensus disorder prediction 509 523 - -
Viun7g02254 1392 CDD ADDz_ATRX 383 481 - -
Viun7g02254 1392 Gene3D - 604 885 IPR038718 -
Viun7g02254 1392 Coils Coil 1275 1295 - -
Viun7g02254 1392 ProSiteProfiles ADD domain profile. 375 507 IPR025766 -
Viun7g02254 1392 Pfam Helicase conserved C-terminal domain 1035 1159 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02254 Viun-Chr7 26910408 26943542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02254 661 1212 RAD5 or RAD16-like Gene Family AT5G43530 24.257 1.93e-30 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun7g02254 SNF2_N 7.5e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02254 K10779 - gmx:100818409 2456.4