Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02252 ATGGAGGTAAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCCAGTGATTCTTTCAATGACGATTCAGATGACGAGGAATCTTTGGTTCCCGAAATAGATGATGGAGTGCATCTTGAGGAGCCGTTAACAGAAGAGGAAATCCAAGATCTTATTTCTGAATTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCGCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTAAAGTAGAGAGTGAAGTTAGACAAGAACTCAAGCAAAGTCTTCAAGGGGATGATTTGGAAACTGCTGTTGATGATGAGATGGCTACTTTTAAAGAAGAATGGGAAGCTGTTCTGGATGACCTTGAAACCGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGAATTGAACTTCCTAGCCTTTATAAGTTGATTGAAAAAGAAGCTCCTAATGTTTGCTCCACTGAAGCTTGGAAAAAGAGGAATCACTGGGTTGGCTCTGTTGCAACTTCAGAAATTGCTGAGTCAATTGCTGATGCGGAGAAGCATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTGTGATGAAACCCAGGAGCCAGTGAAAAATGAAGCTGAGGGTGATTGGGATATGTTCAATAAAATAGTTTCTGATGGGAGCGGCATTGATGCTACATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCAGCCTTGATGGGACTGAAATTTCCTGGAGTTGATGAGGTTGAGGAGATTGATGATGTTGATGGCAATTCTATGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAAGATGATGCAATTGTTGATAAGAAACTTCAAATCCGTTTGAAACATAGGAGGCATAAAAAGATAAGTAAACAGGAAGAAATGAGCACACCTATCCAGTTGACAGACAGCCCTACACAGAAGCCTTCATATGCTGATCATTTAGACCCTGATGCAAAAGAAGGAACTAATTATAATGGGAAAATAGTCTCTGACAATGGCAATGATACATGTGTTCTTATCGAGACTGATAATATTAAAGGTTTTGATGCCAGTCATCATCTTGACAAAGAAAAGCTTACAAGTAGTGATGGCTTGTCAGATCCACCCAAATCGTCAGTGGACGGTGTTATTGAACAGAGAGGAATCAAACGTGTAAGCAGTGGTGAGCTTGATGCTGAAAATAAAAAATCTCGGCTTGTTGTTATTGATAGTGATGATGAAGCAGGGGTCACTAAGGAGAAATTAGATTGCATTACTCAACAAGTAAAAGATGAATTAGGTAAGAATGGTACTGGTTCTCTTCCTTCAGAGTGTCTGGATGAAAAATTTTTGTGCACAGTTTGTGATAAAGTGGCTCTTGAAGTGCATCCACACCCTCTCTTGAAAGTAATTACTTGTGGAGATTGCAATCGCTTATTGAAAGAAAAGGCACATGAAAAGGATCTGAGACAAGATTGTTCGGAGGGTTATTGTACATGGTGTGGAGGAAACAGTGGATTAGTTAGTTGTAAATTATGCAATATTTTATTCTGCACCAAGTGTTTAAAGAAGAATATTGGTGTAGAATTGGTTTCTGAAACTCAGGCCACTAGCTGGCATTGTTGTTGTTGTCATCCAAACCTTTTGCAAAGACTGTCCTTGCAACTAGAGAAAGCTGTGGGGTCTGCTAGTATAGTAGTTTCTAGTTCTAGTAGTGATTCAGATGATTCAGACGATTCAGATAATTCAGATGACTCAGATGATTCAGATGCACAGATTAATGTTACAATGAGCTCCAAGCGAAGACCCAAAAAGAAGATTCGTAGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCAATCGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGAGAGGACAGTTTTCTGCTTCGTCAATTGAGATGAGCCCCGATGGATGTAATGGGAATTTATCAGAAGGTGCAAGTGTTGAAGTTCTTGGTGATGCTCTAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATTTCAGCTAAACTGAAGGCGCATCAGATATCTGGAATAAGATTTATGTGGGAAAATATTATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTTTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTTATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATCTGGGGTTAAGAACTGCACTTATAGTCACACCTGTCAACGTGCTACATAATTGGCGGCAAGAGTTCCTTAAGTGGAGTCCTTCTGAGTTAAAGCCACTCAAAGTCTTCATGCTGGAAGACGTACCAAGGGATAGAAGGGCGGAATTGCTTAAAAAATGGAGAGCTAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGAAACTTGTCTTTTGGGAAGCATGTGAAAGATCGGAACATGGCCAGAGAAATTTGCCATGCTTTGCAGGATGGTCCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACACAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCACTTACTGGGTCACCCCTTCAAAACAATCTCATGGAGTATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACATTGACAGATGTGAAAATTATGAACCAGAGGTCTCATATCCTATATGAAGAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTTGTGATAACTGTCAAGCTTTCTCCCTTGCAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTACCCAGGAGCATCCTGAAATGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTGGCACGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGCCAAGGATTATGCAAAAGAAGAGGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTCAAGTGACGAAAATTCTGATTATAATGTTCTTGCTGGAGAGAAGATGGGGTTTGCAAATGACTTACTGCAAAGAAAAGATGGTAATGGCTTTTTCCTGAAGGGTTGGTGGAATGACCTTCTTCATGGAAAAATATATAAAGAGATCGATCACAGCGGCAAAATGGTTTTGCTGATGGAGATACTAACTATGAGTTCTGATGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGACACCTCGACGTGGAAAACGAGGAAAGTTTTGGAAGAAGGGGAAAGATTGGTATAGGTTGGATGGGAGGACAGTGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTAATTTCAACAAGAGCTGGCTCTTTGGGTATAAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGACAGACAAAGCCTGTATTTGCTTATCGATTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTCACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGGCAGCAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGCGTTTGGTGATGATGACAACCCTGAGACTTTAGGCGATCTAGGTCAAGAAAATGAGCACCAAGAAAACCCAATTTCGGTTGGGCATCCTCTGAAACACACAGCACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTGATGGAAAGCTTACTTAGCAAGCATCATCCGTGGTGGATTGCCCATTATCATGAACATGAATCCCTGTTGCAAGAAAATGAAGATGAAAAACTATCCAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGGAAATCCCTGGAATGGGAAGAAGTCCAGAGAGTACCACTAGGTGAATCTATTGTGCCTATTCAGAAACCAGAAATTCCAAATGATGTGCCTCATGTATCAGAAACTTGTAACATCTTGCCGAGTAAACTAAGCCGACGTTTCGCGTCACGGAAATGCACAAACCTTGCGCACATGTTGACACTTCGAAGCCAGGGAACAAAATTCGGTTGCAGTACTGTCTGTGGGGAATGTGCCCAGGAGATTAGGTGGGAAGATTTGAAGAAGAGATAG 4485 0.4098 MEVKTEDEVVDIESASSDSFNDDSDDEESLVPEIDDGVHLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQSLQGDDLETAVDDEMATFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKLIEKEAPNVCSTEAWKKRNHWVGSVATSEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPVKNEAEGDWDMFNKIVSDGSGIDATFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDKKLQIRLKHRRHKKISKQEEMSTPIQLTDSPTQKPSYADHLDPDAKEGTNYNGKIVSDNGNDTCVLIETDNIKGFDASHHLDKEKLTSSDGLSDPPKSSVDGVIEQRGIKRVSSGELDAENKKSRLVVIDSDDEAGVTKEKLDCITQQVKDELGKNGTGSLPSECLDEKFLCTVCDKVALEVHPHPLLKVITCGDCNRLLKEKAHEKDLRQDCSEGYCTWCGGNSGLVSCKLCNILFCTKCLKKNIGVELVSETQATSWHCCCCHPNLLQRLSLQLEKAVGSASIVVSSSSSDSDDSDDSDNSDDSDDSDAQINVTMSSKRRPKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSIEMSPDGCNGNLSEGASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFLKWSPSELKPLKVFMLEDVPRDRRAELLKKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPEMLRKRCFFAGYQALARIWNHPGILQLTKEAKDYAKEEDAVENFLVDDSSSDENSDYNVLAGEKMGFANDLLQRKDGNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRTPRRGKRGKFWKKGKDWYRLDGRTVSSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFAFGDDDNPETLGDLGQENEHQENPISVGHPLKHTAPHSNGSSYSDKLMESLLSKHHPWWIAHYHEHESLLQENEDEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIVPIQKPEIPNDVPHVSETCNILPSKLSRRFASRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02252 1494 SMART ultradead3 729 950 IPR014001 -
Viun7g02252 1494 ProSiteProfiles ADD domain profile. 477 609 IPR025766 -
Viun7g02252 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1329 IPR027417 -
Viun7g02252 1494 Gene3D - 998 1340 IPR027417 -
Viun7g02252 1494 Gene3D - 706 987 IPR038718 -
Viun7g02252 1494 MobiDBLite consensus disorder prediction 337 352 - -
Viun7g02252 1494 MobiDBLite consensus disorder prediction 326 371 - -
Viun7g02252 1494 Coils Coil 1377 1397 - -
Viun7g02252 1494 MobiDBLite consensus disorder prediction 611 625 - -
Viun7g02252 1494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1141 1309 IPR001650 -
Viun7g02252 1494 CDD ADDz_ATRX 485 583 - -
Viun7g02252 1494 Pfam Helicase conserved C-terminal domain 1137 1261 IPR001650 -
Viun7g02252 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 987 IPR027417 -
Viun7g02252 1494 Coils Coil 107 127 - -
Viun7g02252 1494 CDD SF2_C_SNF 1129 1272 - -
Viun7g02252 1494 MobiDBLite consensus disorder prediction 604 641 - -
Viun7g02252 1494 Pfam SNF2-related domain 756 1056 IPR000330 GO:0005524|GO:0140658
Viun7g02252 1494 PANTHER RAD54-LIKE 17 1492 IPR044574 GO:0016887
Viun7g02252 1494 MobiDBLite consensus disorder prediction 1322 1356 - -
Viun7g02252 1494 Coils Coil 49 76 - -
Viun7g02252 1494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 755 938 IPR014001 -
Viun7g02252 1494 MobiDBLite consensus disorder prediction 1 30 - -
Viun7g02252 1494 SMART helicmild6 1164 1261 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02252 Viun-Chr7 26908572 26943542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02252 763 1314 RAD5 or RAD16-like Gene Family AT5G43530 24.257 1.07e-30 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun7g02252 SNF2_N 8.5e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02252 K10779 - gmx:100794911 2604.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02252 7 26908572 26943542 Viun7g02252 7 26908572 26943542 ECH