Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02230 ATGTCTACCGCTAAGGTCAAGAAAACAGCGGCGGCCGCAAAGAAGCCGTTCTCTCACCCTACCTTCGCCGTGATGATAGCTGAGGCAATTACGAGTCTGAAGGAGAGAACTGGTTCAAGCCAATATGCGATAACGAAGTTCATCGAAGGGAAGCACAAGGAGTTGCCACCAACCTACAAGAAACTTGTGCTCATTCAACTTAAGAAGTCTGTTGCTGCTGGCAAACTTGTCAAGGTTAAAAACTCTTTCAAACTTGCACCCACTAAACCTGCCGCTGCCCCTGCCAAGGCTGCTGTTGCTGCTCCTAAAAAGCCCAAGTCCGTTACCAAGACCACCACCAAGGCTGCTTCTACTGCTGCTAAGAAGAAGCCTGCCGCCAAGCCCAAGTCTAAGACTGCTGTGGCTGCCGCCAAGCCCAAGGCCAAGCCTGCCAAGAAAGTTGTTGCCAAGCCTGCCAAGAAGACTCCGGTAAAGGCGGTGAAAAAGCCCAAGAGTGTGGTTAAGAAACCCAAGAGCGTGAAATCTCCTGCCAAGAAGGCCAAGAAGTGA 549 0.5118 MSTAKVKKTAAAAKKPFSHPTFAVMIAEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGKLVKVKNSFKLAPTKPAAAPAKAAVAAPKKPKSVTKTTTKAASTAAKKKPAAKPKSKTAVAAAKPKAKPAKKVVAKPAKKTPVKAVKKPKSVVKKPKSVKSPAKKAKK 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02230 182 PRINTS Histone H5 signature 32 49 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun7g02230 182 PRINTS Histone H5 signature 5 26 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun7g02230 182 PRINTS Histone H5 signature 168 182 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun7g02230 182 PRINTS Histone H5 signature 146 163 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun7g02230 182 CDD H15 18 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun7g02230 182 SMART h15plus2 16 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun7g02230 182 PANTHER HISTONE H1 8 174 - -
Viun7g02230 182 SUPERFAMILY "Winged helix" DNA-binding domain 15 97 IPR036390 -
Viun7g02230 182 MobiDBLite consensus disorder prediction 90 182 - -
Viun7g02230 182 MobiDBLite consensus disorder prediction 143 182 - -
Viun7g02230 182 Gene3D - 13 99 IPR036388 -
Viun7g02230 182 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 18 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun7g02230 182 Pfam linker histone H1 and H5 family 19 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02230 Viun-Chr7 26715996 26716974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02230 20 85 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 2.67e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02230 K11275 - gmx:100810590 140.969