Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02224 ATGACACACAAACACACGCACGGCACAAGAAGCGTTGGTTTGTTAGTAGTGTGTGTGTGTGTATGGCGTGTGTATTGCTTTGCTTCTTCTTCTCTTTCTCTTCATGCTCTCTTTTCTTTGTCTCGGTCTAACACCAACAACACCCAAACCCAACAACGACAACAACATTGGACGGTGCCCGGTTCATCTTTACGTAGTTTTTCTGCCGAAAATCGAACCCCATCTGGGGATTTGGCCCCCAAAAGCCGCCACCTGAATTCCCTCCCCAGATCCATATCGGTTCCACGTCGAATCCAACAGGGACAGAACCACCGTGGTGTGGTGTGGTTCACTTGGCAGGATTGGAATGCAAAGTTAATTAATTTATTCGTTATCGTAGCGATGGTGTCCAGCCAGGTGGTGAAAGTGAAGAGAGATACGCTACGACCATGCATGACATGCCCTCTCTGCCATAACTTCTACAAAGATGCCACCACCATCTCTCTCTGCCTCCACACCTTTTGCAGGAAGTGCATATATGATAAACTATCGGATGAGGAGATGGATTGCTGTCCTGTGTGCAACATTGATTTAGGCTGTCTTCCGGTTGAAAAGCTCAGGCCAGATCATAATTTGCAAGATATAAGGTCAAAAGTATTCCCGTTTAAGAGAAAAAAGATCAAGGCCCAAGAAGTTTTGTCTTCAATATCACTGCCAACTAAAAGGAAGGAAAGATCACTTTCATCATTGGTAGTCAGTGCTCCCAAAGTTTCAATGCAACCCGGCTTTACAGGAAAGAGAACTAAAACCAGTACAAGAAAAGCTGCTGCTGCTTTACGTGGATGCAGTTTTCTTCTTGAAGAATCCATAAAGAAGGAAGAAACAAATGGTGAAGATAATATGGATCCTTCCATGGCTGAGCCTTCTAAAAAGCACAAGCCTAATGAAAATAAAGAGAACAGTGTGGAACATGCAGAAGGGAAGGTTGATCTCTGGACACCACTGAACTGTCTTGTTGAAGCTGCCAACCGAACAAAGTCCTCCAGGTCAAATTCACAAGCAATTCCTCCTGCCAAATTAGAGTCCCCAGTTACTCCTCATGCTGGTCAAAATATACCTGAAATTACAACCAAAACAGACCAACCTGTTTCTGTCCACAGTGAACTAAACATTCCAAAATCCAAAAATAAGGATACTGGACATAAAACAATATTTGTGGATGACAAGGATGCAAACAGCTTGCCTTCGGGACCAGTGAAGAGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCAGCATCTGAAATGTCTGCCTCATCCCCAGCTCCACTAAATGCAACAGGGAGCAAGTGCAACAGAAAAAACAGTCCTATCTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCTTGCCACAGATCTCAGCATGTTATTTGAGAATAAAGGATGGTAATGTGCCCGTCTCATTTATTCAGAAGTACCTTGTGAAGAAACTTAATCTTTCCAGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAAGCAGTTCTTCCATCATTACAACTGCATACTTTGGTAGATCTATGGTTCCGGACAGCCTCAACCTCGAAAAGGATACCGGCATCAGTGGGGTCTTCAGCCAAAGATTTTGTGATGGTTTTATCGTATTGTCGAAAGACATTGCCCCCTTGA 1683 0.4409 MTHKHTHGTRSVGLLVVCVCVWRVYCFASSSLSLHALFSLSRSNTNNTQTQQRQQHWTVPGSSLRSFSAENRTPSGDLAPKSRHLNSLPRSISVPRRIQQGQNHRGVVWFTWQDWNAKLINLFVIVAMVSSQVVKVKRDTLRPCMTCPLCHNFYKDATTISLCLHTFCRKCIYDKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNLQDIRSKVFPFKRKKIKAQEVLSSISLPTKRKERSLSSLVVSAPKVSMQPGFTGKRTKTSTRKAAAALRGCSFLLEESIKKEETNGEDNMDPSMAEPSKKHKPNENKENSVEHAEGKVDLWTPLNCLVEAANRTKSSRSNSQAIPPAKLESPVTPHAGQNIPEITTKTDQPVSVHSELNIPKSKNKDTGHKTIFVDDKDANSLPSGPVKRRRLRPAGQKRVAASEMSASSPAPLNATGSKCNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGNVPVSFIQKYLVKKLNLSSEAEVEIMCRGQAVLPSLQLHTLVDLWFRTASTSKRIPASVGSSAKDFVMVLSYCRKTLPP 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02224 560 MobiDBLite consensus disorder prediction 427 443 - -
Viun7g02224 560 SUPERFAMILY RING/U-box 141 212 - -
Viun7g02224 560 CDD RING-HC_PCGF 145 188 - -
Viun7g02224 560 SMART ring_2 147 187 IPR001841 -
Viun7g02224 560 Pfam Zinc finger, C3HC4 type (RING finger) 147 187 - -
Viun7g02224 560 Gene3D - 437 537 - -
Viun7g02224 560 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 132 558 IPR044807 GO:0004842
Viun7g02224 560 MobiDBLite consensus disorder prediction 337 351 - -
Viun7g02224 560 MobiDBLite consensus disorder prediction 337 363 - -
Viun7g02224 560 MobiDBLite consensus disorder prediction 400 443 - -
Viun7g02224 560 ProSiteProfiles Zinc finger RING-type profile. 147 188 IPR001841 -
Viun7g02224 560 MobiDBLite consensus disorder prediction 285 317 - -
Viun7g02224 560 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Viun7g02224 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 237 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02224 Viun-Chr7 26680426 26685595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02224 128 479 C3H Transcription Factor Family AT2G30580 43.127 9.20e-82 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02224 K16277 - gmx:100783999 759.599