Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02221 ATGACCAAAACTACCCTGTTTCCGACACCTCTTCCTTCTTCCATTCCCAAACCCTCTCTTTCTGTTTCGCTTTCAACAGAGACTTCACTTTCCCAACATCACCTGAGAAAAGGATACCCTTCACACGCACGCCCTCTGTTTCTCTCTTTCTCTCTTTCTCTTCCTCTTCTGGTTCGGGACGCAGGACAACCCGACAACAACTACTGCAACTACTACAACATGATTAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGTGCCTCTGCAACTGATCATGGCGAGTTAACACTGAAGGGCAGTGGTGGCAAGAGAGGCTTCTCTGAAACTGCTTCTGTTGATTTGAAGCTCAATCTTTCTTCCAATAACGACTCTGCCTCTGTTTCACCGGCTGCAGAGAACCCCAAAGAGAAAACTACCACAGTTGAACCTCCTCCTCGGGCTAACGACCCAGCAAAACCACCTGCAAAGACACAAGTGGTGGGTTGGCCACCAGTGAGATCTTTTAGGAAGAACATAGTGAATGTTCATAATCAAAGGAACGAAGGAGGAGGAGCAGCAGCTTTTGTGAAGGTGAGTATGGATGGTGCACCGTATCTACGGAAGGTGGACATACGGTTGTACAAGAGCTACCAAGAGCTGTCAGAAGCTCTGGCGAAGATGTTCAGTTCCTTTACCATTCAGAAATGTGGGTCCCAAGGGAGCAAGGACTTTATCAATGAGACCAAATTAATAGACCTTTTGAATGGCTCTGATTATGTACCCACATATGAAGACAAGGACGGAGACTGGATGCTCGTCGGTGATGTTCCCTGGGAAATGTTCGTTCAATCATGCAAGCGCCTCCGCATAATGAAGGGTTCTGAGGCAATTGGCCTTGCGCCAAGAGCCGTGGAGAAGTGCAAGAGCAGAAGCTGA 921 0.4832 MTKTTLFPTPLPSSIPKPSLSVSLSTETSLSQHHLRKGYPSHARPLFLSFSLSLPLLVRDAGQPDNNYCNYYNMINFEETELRLGLPGASATDHGELTLKGSGGKRGFSETASVDLKLNLSSNNDSASVSPAAENPKEKTTTVEPPPRANDPAKPPAKTQVVGWPPVRSFRKNIVNVHNQRNEGGGAAAFVKVSMDGAPYLRKVDIRLYKSYQELSEALAKMFSSFTIQKCGSQGSKDFINETKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKSRS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02221 306 Gene3D - 183 300 - -
Viun7g02221 306 Pfam AUX/IAA family 79 297 IPR033389 -
Viun7g02221 306 SUPERFAMILY CAD & PB1 domains 180 287 - -
Viun7g02221 306 ProSiteProfiles PB1 domain profile. 188 288 IPR000270 GO:0005515
Viun7g02221 306 MobiDBLite consensus disorder prediction 119 137 - -
Viun7g02221 306 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 76 293 IPR003311 GO:0005634|GO:0006355
Viun7g02221 306 FunFam Auxin-responsive protein 183 298 - -
Viun7g02221 306 MobiDBLite consensus disorder prediction 119 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02221 Viun-Chr7 26651860 26654192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02221 191 291 B3 DNA Binding Superfamily AT3G61830 32.673 3.17e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Viun7g02221 AUX_IAA 2.2e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02221 K14484 - gmx:100781847 376.711