Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02220 ATGGCAGGTAATAGTAGCTCGGAGGGGTTGGGAGATGATTTCTTCGAACAGATCTTAGCAGTGCCCGAAGCTCCAGTGGGATATGGCAGAGCCGTAGCCACTGACGTTGGAATGCTGCAATTGGGGTCCACTACTCCAACCGCCGCCGCTCTCAGAGGCGGTGGAATGATGCCTCTGGGCCTGAATTTGGAGCAATCTGCGTTTCTAAGCCACCATGATTCCAGAAACCTAGTTGACGACGTTGTTAATGTTGATCCCAGCGTTCACAATAATCACCACCACCATCATCATCATCATCAACACCTCACGCTCCATAATAACAACTCATCACCCTCTCCTACTCCACCAATCACCGATCGCGATTCGATGCATGTGAGAGGTTTGTTTTCAGCGTTTGGACAGTTGCATAGTCCTACTCTTGTTCCCTCTGTCCGCCCCACGCTGTCATCGCCTCCACCACCTCCTCAGCCGCAGCTCCACCTCCACCACCATAACCAACAGGCATTTCAAGGGCAGGGAGGTGGAGGTCCAGCGTCTATGAGTGGTACTCAACAAGCACCTGGCATTCGCCCTCGTGTGAGAGCAAGAAGAGGGCAAGCCACAGATCCACACAGTATTGCTGAAAGGTTGCGTCGCGAAAGAATTGCTGAAAGAATGAAGGCATTGCAGGAGTTAGTTCCCAGTATTAATAAGACGGACAGAGCCGCGATGCTTGATGAAATTGTGGATTATGTCAAGTTCCTAAGACTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGGGGAGCTGGTGCAGTTGCTCAACTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGCAAGGGGAGGACATAGAAGGTGGAGGCAATGAGCAAGCCTGGGACAAGTGGTCCAATGACGGTACAGAACAACAAGTTGCTAAACTTATGGAAGAAGATGTGGGTGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGCATCATGCCCATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAATCATCAACAGTGATCAAGCCTGAATCAAACAGTCACTGA 1068 0.5037 MAGNSSSEGLGDDFFEQILAVPEAPVGYGRAVATDVGMLQLGSTTPTAAALRGGGMMPLGLNLEQSAFLSHHDSRNLVDDVVNVDPSVHNNHHHHHHHHQHLTLHNNNSSPSPTPPITDRDSMHVRGLFSAFGQLHSPTLVPSVRPTLSSPPPPPQPQLHLHHHNQQAFQGQGGGGPASMSGTQQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEDIEGGGNEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSESSTVIKPESNSH 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02220 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 69 334 - -
Viun7g02220 355 SMART finulus 205 254 IPR011598 GO:0046983
Viun7g02220 355 FunFam Basic helix-loop-helix transcription factor 194 256 - -
Viun7g02220 355 Gene3D - 194 256 IPR036638 GO:0046983
Viun7g02220 355 Pfam Helix-loop-helix DNA-binding domain 204 248 IPR011598 GO:0046983
Viun7g02220 355 MobiDBLite consensus disorder prediction 85 121 - -
Viun7g02220 355 MobiDBLite consensus disorder prediction 140 203 - -
Viun7g02220 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Viun7g02220 355 MobiDBLite consensus disorder prediction 160 186 - -
Viun7g02220 355 MobiDBLite consensus disorder prediction 145 159 - -
Viun7g02220 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 258 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02220 Viun-Chr7 26643173 26647876 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02220 181 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 75.862 1.61e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g02220 HLH 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02220 - - gmx:100807570 422.935