Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02219 ATGGCAGGTAATAGTAGCTCGGAGGGGTTGGGAGATGATTTCTTCGAACAGATCTTAGCAGTGCCCGAAGCTCCAGTGGGATATGGCAGAGCCGTAGCCACTGACGTTGGAATGCTGCAATTGGGGTCCACTACTCCAACCGCCGCCGCTCTCAGAGGCGGTGGAATGATGCCTCTGGGCCTGAATTTGGAGCAATCTGCGTTTCTAAGCCACCATGATTCCAGAAACCTAGTTGACGACGTTGTTAATGTTGATCCCAGCGTTCACAATAATCACCACCACCATCATCATCATCATCAACACCTCACGCTCCATAATAACAACTCATCACCCTCTCCTACTCCACCAATCACCGATCGCGATTCGATGCATGTGAGAGGTTTGTTTTCAGCGTTTGGACAGTTGCATAGTCCTACTCTTGTTCCCTCTGTCCGCCCCACGCTGTCATCGCCTCCACCACCTCCTCAGCCGCAGCTCCACCTCCACCACCATAACCAACAGGTATTGATACAAAATGGTCAATACAACTTGACAAAACGCAGAGGCAACAGGCACGCAACAAGTGACTTTGTTTCAATTTCAACGCCCTTGTACTGGGCATTTCAAGGGCAGGGAGGTGGAGGTCCAGCGTCTATGAGTGGTACTCAACAAGCACCTGGCATTCGCCCTCGTGTGAGAGCAAGAAGAGGGCAAGCCACAGATCCACACAGTATTGCTGAAAGGTTGCGTCGCGAAAGAATTGCTGAAAGAATGAAGGCATTGCAGGAGTTAGTTCCCAGTATTAATAAGACGGACAGAGCCGCGATGCTTGATGAAATTGTGGATTATGTCAAGTTCCTAAGACTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGGGGAGCTGGTGCAGTTGCTCAACTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGCAAGGGGAGGACATAGAAGGTGGAGGCAATGAGCAAGCCTGGGACAAGTGGTCCAATGACGGTACAGAACAACAAGTTGCTAAACTTATGGAAGAAGATGTGGGTGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGCATCATGCCCATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAATCATCAACAGTGATCAAGCCTGAATCAAACAGTCACTGA 1164 0.4966 MAGNSSSEGLGDDFFEQILAVPEAPVGYGRAVATDVGMLQLGSTTPTAAALRGGGMMPLGLNLEQSAFLSHHDSRNLVDDVVNVDPSVHNNHHHHHHHHQHLTLHNNNSSPSPTPPITDRDSMHVRGLFSAFGQLHSPTLVPSVRPTLSSPPPPPQPQLHLHHHNQQVLIQNGQYNLTKRRGNRHATSDFVSISTPLYWAFQGQGGGGPASMSGTQQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEDIEGGGNEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSESSTVIKPESNSH 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02219 387 FunFam Basic helix-loop-helix transcription factor 226 288 - -
Viun7g02219 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983
Viun7g02219 387 MobiDBLite consensus disorder prediction 85 121 - -
Viun7g02219 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 290 IPR036638 GO:0046983
Viun7g02219 387 SMART finulus 237 286 IPR011598 GO:0046983
Viun7g02219 387 Pfam Helix-loop-helix DNA-binding domain 236 280 IPR011598 GO:0046983
Viun7g02219 387 MobiDBLite consensus disorder prediction 205 235 - -
Viun7g02219 387 Gene3D - 226 288 IPR036638 GO:0046983
Viun7g02219 387 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 97 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02219 Viun-Chr7 26643173 26647876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02219 213 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 75.862 5.00e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g02219 HLH 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02219 - - vun:114189791 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02219 7 26643173 26647876 Viun7g02219 7 26643173 26647876 ECH