Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02162 ATGGGGTGTATAATTGGCAGAGAAGTGTCATCGGGAATAATCTCCGAGGTGAAGGAGGAGAAGAGTGTGAGTGTTGAATCAAACAAGAAAGTTGATGAAGTGCCCACAAGCAGTGCTGAGGAGAACGTGGTAGAGGCTCTGAATGGTGAGAAGGAGAAAGAGAAGGAGAAGGAAGAGAATGGTGGTGGCGATGGAGTCCGGGGAACGAAGGATGACAGAAGAAGGTCAAAGCCAAATCCAAGGCTAAGTAATCCACCGAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTAACAGCAGTGTGTGGTGAAGCTCTTAGTGGGTGGATTCCGCGAAAGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCCAGAGAGATTCTTATTTTGAGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATAAAATTTACAGAGCCACAGGTTAAATGTTACACTCATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTAACGATGAAGGGATACTTAAAATTGCTGACTTTGGCCTTGCATCTTTCTTTGATCCAGACCGCCGGCATCCCATGACTAATCGTGTAGTTACCCTTTGGTACCGCCCCCTTGAGTTGCTTCTTGGTGCCACAGAATATGGTGTGGCCATCGACCTTTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCTATTATGCCTGGACGTACGGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGATCACCTTCTGATGAGTATTGGAAGAAGTCAAAGATGCCTAATGCTACCTTGTTTAAACCTCGACAGCCATACAGGAGGTGTATAAGAGAGACATTTAAAGATTTTCCACCTTCATCTCTGCCCCTTATTGAGACTCTTCTTGCTATTGATCCAGCAGAACGAAAGACTGCCTCAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTCTTAGTCTTCCAAAATATCCCCCAACAAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGGAGATCAAGAGCTGCTGGCAAAACTGGTGTTGATGGTCCAAAGAAGCATCGGAGTCGCGAACGCGCTGCCAAAGCTGCTCCTGCTCCAGAAGCCAATGCTGAGCTTCAATCCAACGTGGATAGAAGGCGATTAATCAGTCATGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCACCGCATGAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCTAATCACATTGATCCAGATATCATACCTTCTGACATCTCTTTGGGTTCAACCTCGTACACCTTTTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCAATTGGTAATCCTGCCAGCATTAGTAAGCAGAAGAAACACACTACTGGTGATGATGCATTGGATTTGTCAAAATCATACAAAGGAACTCTCAAGCATAAAGTTAAAGGAAAAAAAATCCCAGCCTAG 1749 0.4391 MGCIIGREVSSGIISEVKEEKSVSVESNKKVDEVPTSSAEENVVEALNGEKEKEKEKEENGGGDGVRGTKDDRRRSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYTHQLLSGLEHCHSRNVLHRDIKGSNLLINDEGILKIADFGLASFFDPDRRHPMTNRVVTLWYRPLELLLGATEYGVAIDLWSVGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKMPNATLFKPRQPYRRCIRETFKDFPPSSLPLIETLLAIDPAERKTASDALRSEFFTTEPYACDPLSLPKYPPTKEMDAKRRDDEARRSRAAGKTGVDGPKKHRSRERAAKAAPAPEANAELQSNVDRRRLISHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIIPSDISLGSTSYTFSKEPFQAWSGPIGNPASISKQKKHTTGDDALDLSKSYKGTLKHKVKGKKIPA 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02162 582 MobiDBLite consensus disorder prediction 472 496 - -
Viun7g02162 582 MobiDBLite consensus disorder prediction 1 93 - -
Viun7g02162 582 MobiDBLite consensus disorder prediction 415 511 - -
Viun7g02162 582 MobiDBLite consensus disorder prediction 423 460 - -
Viun7g02162 582 CDD STKc_CDK9_like 121 405 - -
Viun7g02162 582 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g02162 582 MobiDBLite consensus disorder prediction 13 36 - -
Viun7g02162 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Viun7g02162 582 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g02162 582 Gene3D Transferase(Phosphotransferase) domain 1 204 444 - -
Viun7g02162 582 FunFam probable serine/threonine-protein kinase At1g54610 204 445 - -
Viun7g02162 582 Coils Coil 37 57 - -
Viun7g02162 582 PANTHER CELL DIVISION PROTEIN KINASE 119 409 - -
Viun7g02162 582 FunFam probable serine/threonine-protein kinase At1g54610 108 203 - -
Viun7g02162 582 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Viun7g02162 582 SMART serkin_6 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g02162 582 MobiDBLite consensus disorder prediction 45 79 - -
Viun7g02162 582 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Viun7g02162 582 MobiDBLite consensus disorder prediction 536 562 - -
Viun7g02162 582 SUPERFAMILY Protein kinase-like (PK-like) 116 411 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02162 Viun-Chr7 26210384 26216626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02162 113 443 Core Cell Cycle Gene Families AT5G10270 52.450 2.20e-119 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Viun7g02162 Pkinase 3.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02162 K08819 - gmx:100817289 987.252